Locus 8397

Sequence ID 3L_DroMel_CAF1
Location 22,077,010 – 22,077,117
Length 107
Max. P 0.953611
window13731

overview

Window 1

Location 22,077,010 – 22,077,117
Length 107
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 74.88
Mean single sequence MFE -22.00
Consensus MFE -12.47
Energy contribution -13.96
Covariance contribution 1.50
Combinations/Pair 1.11
Mean z-score -2.21
Structure conservation index 0.57
SVM decision value 1.43
SVM RNA-class probability 0.953611
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22077010 107 + 23771897
CUCUCAUGGAACCCCACCCUGACAUGCAUGCACAUAAAACCUCAACAUUAUUAUAAUUAUUUGUGCUUGUGAUCGGAAACGACUCAUAGGGUUCUCUAUUACCUAGG
.......(((((((...............(((((...........................))))).((((((((....))).))))))))))))............ ( -24.23)
>DroSec_CAF1 62475 84 + 1
CUCUUAUGGAACCCUAA-UUCACAUGC----------------AACAUUAUUAUAAUUAUUUGGGCUUGUGAUCGGAAACAACUCAUGAGGUUCUCCCUUA------
.......((((((....-.(((((.((----------------.....((.......)).....)).)))))..(....).........))))))......------ ( -15.40)
>DroSim_CAF1 68349 100 + 1
CUCUUAUGGAACCCUAA-CUCACAUGCAUGCGCCUAAAACCUCAACAUUAUUAUAAUUAUUUGGGCUUGUGAUCGGAAACGACUCAUGGGGUUCUCCCUUA------
.......(((((((((.-.(((((.(....)(((((((.....................))))))).)))))(((....)))....)))))))))......------ ( -27.30)
>DroYak_CAF1 75809 92 + 1
CUUUUAUAGAACCCUAC-CUCACAUGCAUGCAUAUAAAACCUCAACAUUAUUAUAAUUAUUUGGGGUUGUGAUCUGAGAAGUCUUAUAGGGUU--------------
.........(((((((.-.(((((((....)))....((((((((...............))))))))))))..((((....)))))))))))-------------- ( -21.06)
>consensus
CUCUUAUGGAACCCUAA_CUCACAUGCAUGCACAUAAAACCUCAACAUUAUUAUAAUUAUUUGGGCUUGUGAUCGGAAACGACUCAUAGGGUUCUCCCUUA______
.......(((((((((...(((((.((.....................................)).)))))(((....)))....)))))))))............ (-12.47 = -13.96 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:18 2006