Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,076,044 – 22,076,135 |
Length | 91 |
Max. P | 0.769601 |
Location | 22,076,044 – 22,076,135 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 96.48 |
Mean single sequence MFE | -30.04 |
Consensus MFE | -25.78 |
Energy contribution | -25.82 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22076044 91 + 23771897 UUACUGGGAUACUGAGAUACACAGAUACUUAGAAAGAAGACUGCCGAGGCAGCGGCAACUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG ...(..((((((((((((......)).))))).........((((((((..(((.(..........).)))..))))).))))))))..). ( -25.60) >DroSec_CAF1 61502 91 + 1 UUACUGGGAUACUGAGAUACACGGAUACUCAGAAACAAGACUGCCGAGGCAGCGGCAGCUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG ...(..(((((.((...((((.((((((.(.......((.((((((......)))))))).......).)))))).)))))))))))..). ( -33.84) >DroSim_CAF1 67384 91 + 1 UUACUGGGAUACUGAGAUACACGGAUACUCAGAAACAAGACUGCCGAGGCAGCGGCAGCUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG ...(..(((((.((...((((.((((((.(.......((.((((((......)))))))).......).)))))).)))))))))))..). ( -33.84) >DroEre_CAF1 61839 91 + 1 UUACUGGGAUACUGAGAUACACGGAUACUCAGAAGCAAGACUGCCGAGGCAGCGGCAACUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG ...(..(((((.((...((((.((((((((((..((....((((....))))..))..)))).......)))))).)))))))))))..). ( -31.71) >DroYak_CAF1 74848 91 + 1 UUACUGGCAUACUGAGAUACACGGAAACUCAGAAACAAGACUGCCGAGGCAGCGGCAUCUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG ...(..(....(((((...........)))))......(((((((((((..(((.(.((.....))).)))..))))).))).))))..). ( -25.20) >consensus UUACUGGGAUACUGAGAUACACGGAUACUCAGAAACAAGACUGCCGAGGCAGCGGCAACUGACAGAGGCGUAUCCUUGUGCAUGUCCUGGG ...(..((((((((((...........))))).........((((((((..(((.(..........).)))..))))).))))))))..). (-25.78 = -25.82 + 0.04)
Location | 22,076,044 – 22,076,135 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 96.48 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -23.36 |
Energy contribution | -23.28 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.13 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22076044 91 - 23771897 CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGUUGCCGCUGCCUCGGCAGUCUUCUUUCUAAGUAUCUGUGUAUCUCAGUAUCCCAGUAA .....((.(((((((..(((((((..(.....)..)).(((((....)))))...........)))))))))))).))............. ( -22.10) >DroSec_CAF1 61502 91 - 1 CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGCUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA .....((.((((((..((((((........(((((((((......)))))))..)).......)))))))))))).))............. ( -26.36) >DroSim_CAF1 67384 91 - 1 CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGCUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA .....((.((((((..((((((........(((((((((......)))))))..)).......)))))))))))).))............. ( -26.36) >DroEre_CAF1 61839 91 - 1 CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGUUGCCGCUGCCUCGGCAGUCUUGCUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA .....((.((((((..((((((.......((((..((.(((((....)))))...))..)))))))))))))))).))............. ( -27.11) >DroYak_CAF1 74848 91 - 1 CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGAUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUUUCCGUGUAUCUCAGUAUGCCAGUAA ....((.(((((....((((((((.....(((((.((.(((((....)))))...)).)))))......))))))))..)))))))..... ( -30.80) >consensus CCCAGGACAUGCACAAGGAUACGCCUCUGUCAGCUGCCGCUGCCUCGGCAGUCUUGUUUCUGAGUAUCCGUGUAUCUCAGUAUCCCAGUAA .....((.((((((..((((((......(..((((((((......)))))).))..)......)))))))))))).))............. (-23.36 = -23.28 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:17 2006