Locus 8395

Sequence ID 3L_DroMel_CAF1
Location 22,074,612 – 22,074,715
Length 103
Max. P 0.992869
window13728

overview

Window 8

Location 22,074,612 – 22,074,715
Length 103
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 88.09
Mean single sequence MFE -29.41
Consensus MFE -24.86
Energy contribution -26.26
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.38
Structure conservation index 0.85
SVM decision value 2.36
SVM RNA-class probability 0.992869
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22074612 103 + 23771897
GUAGCCACCCCACCAAGCCCCACCC-----CACACACGCACACUCUAUCGUCCUGGCUCUGCAGAAGCCGGGAUCCCCUCUGGAUCCCAGUACAAACAUUGUCUGGCU
..(((((..(......((.......-----.......))..........((.(((((((....).))))(((((((.....))))))))).)).......)..))))) ( -24.84)
>DroSec_CAF1 60074 108 + 1
GUAGCCACCCCACCAAACCCCACCCCAUUCCACACACGCACGCUCUAUCGUCCUGGCUCUGAAGGAGCCGGGAUCCCCUCUGGAUCCCAGGACAAACAUUGUCUGGCU
..(((((..(...........................(....)......((((((((((.....)))))(((((((.....)))))))))))).......)..))))) ( -34.50)
>DroSim_CAF1 65916 108 + 1
GUAGCCACCCCAGCAAACCCCACCCCAUCCCACACACGCACGCUCUAUCGUCCUGGCUCUGCAGGAGCCGGGAUCCCCUCUGGAUCCCAGGACAAACAUUGUCUGGCU
..(((((..(..((.......................))..........((((((((((.....)))))(((((((.....)))))))))))).......)..))))) ( -35.60)
>DroEre_CAF1 60431 101 + 1
GUAGCCACCCCACC-----CC-ACUCACCCCACACACGCACGCUCUAUCGUCCUGGCUCUGCUGGAUCCAGGAUCCCCUCUGGAUCCCAGGACAAACAUUGUCUGGC-
...((((..(....-----..-...............(....)......((((((((...)).(((((((((......))))))))))))))).......)..))))- ( -27.00)
>DroYak_CAF1 68903 103 + 1
GUAGCCACCCCACA-----CCAACUCACCCCACACACGCACGCUCUGUCGUCCUGGCUCUGCUGUAUCCAGGAUCCCCUCUGGAUCCCAGGACAAACAUUGUCUGGCU
..(((((..(....-----..................(((.....))).(((((((.....(((....)))(((((.....)))))))))))).......)..))))) ( -25.10)
>consensus
GUAGCCACCCCACCAA_CCCCACCCCACCCCACACACGCACGCUCUAUCGUCCUGGCUCUGCAGGAGCCGGGAUCCCCUCUGGAUCCCAGGACAAACAUUGUCUGGCU
...((((..(...........................(....)......((((((((((.....)))))(((((((.....)))))))))))).......)..)))). (-24.86 = -26.26 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:16 2006