Locus 8394

Sequence ID 3L_DroMel_CAF1
Location 22,070,710 – 22,070,806
Length 96
Max. P 0.500000
window13727

overview

Window 7

Location 22,070,710 – 22,070,806
Length 96
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 89.58
Mean single sequence MFE -34.75
Consensus MFE -29.25
Energy contribution -29.20
Covariance contribution -0.05
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.84
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22070710 96 + 23771897
-GGGAUCCUGUGGCGGCACUUGUGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCC-----UUGCACAUGCAGGUUU----GCUCUCCU
-(((..(((((((..(((((((..((..(.....)..))....)))))))...))...........((((((.-----..)))))))))))...----.))).... ( -31.40)
>DroPse_CAF1 69472 105 + 1
-GGGAUCCUGUGGCGGCACUUGCGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCCCUUCCCUGCACAUGCAGGUUGCAUGGCGCCCCU
-(((.....((((..(((((((((((..(.....)..)).)).)))))))...))))...........(((((.(..(((((....)))))..)...)))))))). ( -38.00)
>DroSec_CAF1 55879 96 + 1
-GGGAUACUGUGGCGGCACUUGUGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCC-----UUGCACAUGCAGGCUU----GCUCUCCU
-((((..((((((..(((((((..((..(.....)..))....)))))))...)).....))))......(((-----(.((....))))))..----....)))) ( -29.00)
>DroEre_CAF1 56486 96 + 1
-GGGAUCCUGCGGCGGCACUUGUGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCC-----UUGCACAUGCAGGUUC----GCUCUGCU
-(.((.(((((((..(((((((..((..(.....)..))....)))))))...))...........((((((.-----..))))))))))).))----.)...... ( -34.60)
>DroAna_CAF1 79384 96 + 1
CGGGAACCUGCGGCGGCACUUGCGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCC-----UUGCACAUGCAGGUUU----GCUCUCU-
.(.((((((((((..(((((((((((..(.....)..)).)).)))))))...))...........((((((.-----..))))))))))))))----.).....- ( -37.50)
>DroPer_CAF1 69316 105 + 1
-GGGAUCCUGUGGCGGCACUUGCGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCCCUUCCCUGCACAUGCAGGUUGCAUGGCGCCCCU
-(((.....((((..(((((((((((..(.....)..)).)).)))))))...))))...........(((((.(..(((((....)))))..)...)))))))). ( -38.00)
>consensus
_GGGAUCCUGUGGCGGCACUUGCGGUUGCUGUGUGUGGCAUGUUAAGUGCAAUCCAUUAUACAGAUAUGUGCC_____UUGCACAUGCAGGUUU____GCUCUCCU
......(((((((..(((((((..((..(.....)..))....)))))))...))...........((((((........)))))))))))............... (-29.25 = -29.20 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:15 2006