Locus 8393

Sequence ID 3L_DroMel_CAF1
Location 22,064,942 – 22,065,041
Length 99
Max. P 0.851972
window13726

overview

Window 6

Location 22,064,942 – 22,065,041
Length 99
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 78.09
Mean single sequence MFE -39.70
Consensus MFE -24.62
Energy contribution -25.62
Covariance contribution 1.00
Combinations/Pair 1.32
Mean z-score -1.92
Structure conservation index 0.62
SVM decision value 0.79
SVM RNA-class probability 0.851972
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22064942 99 - 23771897
---AUCGGGGGUAGGUGGUCGGUGGUGGGGGGUCGUGGGUCGUGGCUCAUGAGGUCCAAGGACCUCGACCAGAACGAGGCCAACGGCGACGGUUAGCGACUU
---.(((..(((..((.((((.((((..(.((((((((((....))))))((((((....))))))))))....)...)))).)))).)).)))..)))... ( -37.20)
>DroSec_CAF1 49765 92 - 1
---GUUGGUGGUCGGCG-------GUCGGUGGUGGGGGGUCGGGGUUCAUGAGGUCCAAGGACCUCGACCAGAACGAGGCCAACGGCGACGGUUAGCGACUU
---(((..(.((((.((-------...(((..((...(((((((((((.((.....)).)))))))))))....))..)))..)).)))).)..)))..... ( -42.20)
>DroSim_CAF1 55777 99 - 1
---GUCGGUGGUCGGUGGUCGAUGGUCGGUGGUGGGGGGUCGGGGUUCAUGAGGUCCAAGGACCUCGACCAGAACGAGGCCAACGGCGACGGUUAGCGACUU
---((((.((..((.(.((((.(((((....((....(((((((((((.((.....)).)))))))))))...))..))))).)))).)))..)).)))).. ( -47.00)
>DroEre_CAF1 50129 78 - 1
-----------------------AGCUGGUGGUCG-GGGUCGGGGUUCAUGAGGUCCAAGGACCUCGACCAGAACGAGGCCAUCGGCGACGGUUAGCGACUU
-----------------------.((((((((((.-.(((((((((((.((.....)).))))))))))).......))))))))))............... ( -37.50)
>DroYak_CAF1 57622 101 - 1
GGGAUCGGGGGUUGGUUGUCAGGGAUCGGGGAUCG-GGGUUGGAGUUCAUGAGGUCCAAGAGCCCUGACCAGAACAAGGCCAACGGCGACGGUUAGCGACUU
..(((((..(((((((((((((((.((..(((((.-(..(....)..)....)))))..)).)))))))........)))))))..)..)))))........ ( -34.60)
>consensus
___AUCGGGGGUCGGUGGUC___GGUCGGUGGUCG_GGGUCGGGGUUCAUGAGGUCCAAGGACCUCGACCAGAACGAGGCCAACGGCGACGGUUAGCGACUU
........................((((.(((((...(((((((((((.((.....)).))))))))))).......))))).))))............... (-24.62 = -25.62 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:14 2006