Locus 8392

Sequence ID 3L_DroMel_CAF1
Location 22,060,434 – 22,060,528
Length 94
Max. P 0.954556
window13725

overview

Window 5

Location 22,060,434 – 22,060,528
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.49
Mean single sequence MFE -39.64
Consensus MFE -29.02
Energy contribution -30.70
Covariance contribution 1.68
Combinations/Pair 1.07
Mean z-score -3.20
Structure conservation index 0.73
SVM decision value 1.44
SVM RNA-class probability 0.954556
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22060434 94 + 23771897
AAACCCGCCCCGCCCAGGUCCUUCCAGAAUGGUUUUGGGAUCUUUGGGGUCUUUGGGGCGGUCUGCGGCUUAUCUUUGGGUGUGCUGUGCCAAA
....((((((((((((((((((.((.....))....)))))))...))))....)))))))...(((((.((((....)))).)))))...... ( -39.70)
>DroSec_CAF1 45301 91 + 1
AACCCUGCCCCGCCCAGGUCCUUCCAGAAUGGUUUUGGGAUCU---GGGUCUUUGGGGCGGUCUGCGGCUUAUCUUUGGUUGUGCUGUGCCAAA
......((((((((((((((((.((.....))....)))))))---))))....)))))(((..(((((..((.....))...))))))))... ( -41.10)
>DroSim_CAF1 51252 91 + 1
AACCCCGCCCCGCCCAGGUCCUUCCAGAAUGGUUUUGGGAUCU---GGGUCUUUGGGGCGGUCUGCGGCUUAUCUUUGGGUGUGCUGUGCCAAA
....((((((((((((((((((.((.....))....)))))))---))))....)))))))...(((((.((((....)))).)))))...... ( -45.50)
>DroEre_CAF1 45560 86 + 1
AAACC-----CGCCCAGGUCCUUCCACAAAGGUUUUGGGAUCU---GGGCCUUUGGGGCGGUCUGCGGCUUAUCUUUGGGUGUGCUGUGCCAAA
...((-----((((((((((((.((.....))....)))))))---))))....)))..(((..(((((.((((....)))).))))))))... ( -38.70)
>DroYak_CAF1 53185 85 + 1
AACCC-----CGCCCAGGACCUUUCAGAAUGGU-UUGGGAUCU---GGGUCUUUGGGGCGGUCUGCGGCUUAUCUUUGGGUGUGCUGUGCCAAA
..(((-----((((((((.(((.((.....)).-..))).)))---))))....)))).(((..(((((.((((....)))).))))))))... ( -33.20)
>consensus
AACCC_GCCCCGCCCAGGUCCUUCCAGAAUGGUUUUGGGAUCU___GGGUCUUUGGGGCGGUCUGCGGCUUAUCUUUGGGUGUGCUGUGCCAAA
......((((((((((((((((.((.....))....)))))))...))))....)))))(((..(((((.((((....)))).))))))))... (-29.02 = -30.70 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:12 2006