Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,059,335 – 22,059,467 |
Length | 132 |
Max. P | 0.998727 |
Location | 22,059,335 – 22,059,438 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 99.42 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -37.00 |
Energy contribution | -37.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 1.00 |
SVM decision value | 3.05 |
SVM RNA-class probability | 0.998264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22059335 103 + 23771897 AAGUGAAGCCGCUUUGAGCUUUAACGCUUUGUACAGAUUUCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUC ...((((((........))))))....(((((.............(((((((......)))))))(((((((..((((.....))))..)))))))))))).. ( -37.00) >DroSec_CAF1 44199 103 + 1 AAGUGAAGCCGCUUUGAGCUUUAACGCUUUGUACAGAUUUCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUC ...((((((........))))))....(((((.............(((((((......)))))))(((((((..((((.....))))..)))))))))))).. ( -37.00) >DroSim_CAF1 50161 103 + 1 AAGUGAAGCCGCUUUGAGCUUUAACGCUUUGUACAGAUUUCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUC ...((((((........))))))....(((((.............(((((((......)))))))(((((((..((((.....))))..)))))))))))).. ( -37.00) >DroEre_CAF1 44469 103 + 1 AAGUGAAGCCGCUUUGAGCUUUAACGCUUUGUACAGAUUUCCAUUAGUGGAGUGUGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUC ...((((((........))))))....(((((.............(((((((......)))))))(((((((..((((.....))))..)))))))))))).. ( -37.00) >DroYak_CAF1 51670 103 + 1 AAGUGAAGCCGCUUUGAGCUUUAACGCUUUGUACAGAUUUCCAUUAGUGGAGUGUGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUC ...((((((........))))))....(((((.............(((((((......)))))))(((((((..((((.....))))..)))))))))))).. ( -37.00) >consensus AAGUGAAGCCGCUUUGAGCUUUAACGCUUUGUACAGAUUUCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUC ...((((((........))))))....(((((.............(((((((......)))))))(((((((..((((.....))))..)))))))))))).. (-37.00 = -37.00 + 0.00)
Location | 22,059,335 – 22,059,438 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 99.42 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -29.90 |
Energy contribution | -29.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 1.00 |
SVM decision value | 3.20 |
SVM RNA-class probability | 0.998727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22059335 103 - 23771897 GAUUUGCGCCCACACAUGCAGCACACGCACACGUGGGCAGUGGAAAACCCACUCCACUAAUGGAAAUCUGUACAAAGCGUUAAAGCUCAAAGCGGCUUCACUU (((((.(((((((...(((.......)))...))))))((((((........))))))...).)))))..............(((((......)))))..... ( -29.90) >DroSec_CAF1 44199 103 - 1 GAUUUGCGCCCACACAUGCAGCACACGCACACGUGGGCAGUGGAAAACCCACUCCACUAAUGGAAAUCUGUACAAAGCGUUAAAGCUCAAAGCGGCUUCACUU (((((.(((((((...(((.......)))...))))))((((((........))))))...).)))))..............(((((......)))))..... ( -29.90) >DroSim_CAF1 50161 103 - 1 GAUUUGCGCCCACACAUGCAGCACACGCACACGUGGGCAGUGGAAAACCCACUCCACUAAUGGAAAUCUGUACAAAGCGUUAAAGCUCAAAGCGGCUUCACUU (((((.(((((((...(((.......)))...))))))((((((........))))))...).)))))..............(((((......)))))..... ( -29.90) >DroEre_CAF1 44469 103 - 1 GAUUUGCGCCCACACAUGCAGCACACGCACACGUGGGCAGUGGAAAACACACUCCACUAAUGGAAAUCUGUACAAAGCGUUAAAGCUCAAAGCGGCUUCACUU (((((.(((((((...(((.......)))...))))))((((((........))))))...).)))))..............(((((......)))))..... ( -29.90) >DroYak_CAF1 51670 103 - 1 GAUUUGCGCCCACACAUGCAGCACACGCACACGUGGGCAGUGGAAAACACACUCCACUAAUGGAAAUCUGUACAAAGCGUUAAAGCUCAAAGCGGCUUCACUU (((((.(((((((...(((.......)))...))))))((((((........))))))...).)))))..............(((((......)))))..... ( -29.90) >consensus GAUUUGCGCCCACACAUGCAGCACACGCACACGUGGGCAGUGGAAAACCCACUCCACUAAUGGAAAUCUGUACAAAGCGUUAAAGCUCAAAGCGGCUUCACUU (((((.(((((((...(((.......)))...))))))((((((........))))))...).)))))..............(((((......)))))..... (-29.90 = -29.90 + 0.00)
Location | 22,059,374 – 22,059,467 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -34.75 |
Consensus MFE | -24.95 |
Energy contribution | -26.37 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.15 |
Mean z-score | -2.19 |
Structure conservation index | 0.72 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22059374 93 + 23771897 UCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUCGCUUCGCUCCGAAAGUUGACACGCACAUA ((((....))))((((((........))))))(((((((((((((....(.(((((((.....))).)))).)....)))..)))))))))). ( -37.80) >DroSec_CAF1 44238 93 + 1 UCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUCGCUUGGCUCCGAAAGUUGACACGCACAUA ((((....))))((((((........))))))((((((((((.(.((...((.((((.(((.....)))))))))...)).))))))))))). ( -37.90) >DroSim_CAF1 50200 93 + 1 UCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUCGCUUGGCUCCGAAAGUUGACACGCACAUA ((((....))))((((((........))))))((((((((((.(.((...((.((((.(((.....)))))))))...)).))))))))))). ( -37.90) >DroEre_CAF1 44508 93 + 1 UCCAUUAGUGGAGUGUGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUCGCUCGGCUCCGAAAGUUGACACGCACAUA ((((....))))((((((..((.((((((((((..((((.....))))..)))))))((.....))(((....))).))).)).))))))... ( -37.20) >DroYak_CAF1 51709 93 + 1 UCCAUUAGUGGAGUGUGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUCGCUUGGCUCCGAAAGUUGACACGCACAUA ((((....))))(((((((..(((..(((((((..((((.....))))..)))))))((.....)).)))...(....)..)))))))..... ( -35.80) >DroAna_CAF1 64979 80 + 1 UGCCCGUGUGGGGCAAGUUUGCCAGUCUCC--------AUGUGCAACACGUGCAGAGGAAUCUCGCUCGACUCAGAAA-UUGACAUACG---- ....((((((.((((....))))((((..(--------(((((...))))))..((((.....).)))))))......-....))))))---- ( -21.90) >consensus UCCAUUAGUGGAGUGGGUUUUCCACUGCCCACGUGUGCGUGUGCUGCAUGUGUGGGCGCAAAUCGCUUGGCUCCGAAAGUUGACACGCACAUA ......(((((((......)))))))(((((((..((((.....))))..))))))).......((((((((.....))))))...))..... (-24.95 = -26.37 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:11 2006