Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,540,352 – 2,540,451 |
Length | 99 |
Max. P | 0.779865 |
Location | 2,540,352 – 2,540,451 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 75.15 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -16.56 |
Energy contribution | -15.95 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.33 |
Mean z-score | -1.39 |
Structure conservation index | 0.64 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2540352 99 - 23771897 ---UAGCUAUUUAGUUGGCCAGUGUGUUAAUACACUUUUUUUUUACUCCUUCUUAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUCGGCACUGGACAAA ---...........(((.(((((((.......((((..................))))((((.....))))....(((((.....)))))))))))).))). ( -27.67) >DroPse_CAF1 2980 96 - 1 C--CCGCUUUUGUUCUUGCCAACAUUU-AAUUUCCCCU---CUUUUGUUUUUGCAGUGGGGAGAGAUGCCCACCUCAGUGGCAUACAUUGGCACUGGACAAA .--.....(((((((.((((((.....-..(((((((.---...((((....)))).))))))).(((((.((....)))))))...))))))..))))))) ( -33.00) >DroSec_CAF1 2437 95 - 1 ---UAGCUAUUU-GUUGGCCAGUGUGU-AAUACA--UUUUCUUUAAUCCCUCUUAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA ---......(((-(((.(((((((((.-......--...((((...((((.......)))).)))).(.((((....)))).))))))))))....)))))) ( -27.90) >DroEre_CAF1 16025 96 - 1 ---CACCUAUUAAGUUGGCCAGCGUGUUAAUACACUUU---UUUAUUCCCUUUUAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA ---..((..((((((.(((((.(((((....))))...---..............(((((........)))))...).))))).)).))))....))..... ( -25.10) >DroYak_CAF1 271 98 - 1 ---CAUCUAUUUAUUUGGUCAGCGUGUUAAUAAACUUU-UUUUUAAUCCCUCUCAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA ---..............(((...((((((((.......-.......((((((.....)))).))...(.((((....)))).)...))))))))..)))... ( -22.80) >DroMoj_CAF1 2746 91 - 1 UGCAAUCUAUAUC---------UAUAUUAAUCUAUUUA-U-AUUCUUCCUUUGCAGUGGGGUGAAAUGCCUACCUCGGUGGCCUACAUUGGCACUGGACAAA (((((...((((.---------.(((......)))..)-)-)).......)))))(((((........))))).((((((.((......))))))))..... ( -18.10) >consensus ___CAGCUAUUUAGUUGGCCAGCGUGUUAAUACACUUU_U_UUUAUUCCCUCUCAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA .....................................................(((((((((.....))))...((((((.....)))))))))))...... (-16.56 = -15.95 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:26 2006