Locus 839

Sequence ID 3L_DroMel_CAF1
Location 2,540,352 – 2,540,451
Length 99
Max. P 0.779865
window1290

overview

Window 0

Location 2,540,352 – 2,540,451
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.15
Mean single sequence MFE -25.76
Consensus MFE -16.56
Energy contribution -15.95
Covariance contribution -0.61
Combinations/Pair 1.33
Mean z-score -1.39
Structure conservation index 0.64
SVM decision value 0.55
SVM RNA-class probability 0.779865
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2540352 99 - 23771897
---UAGCUAUUUAGUUGGCCAGUGUGUUAAUACACUUUUUUUUUACUCCUUCUUAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUCGGCACUGGACAAA
---...........(((.(((((((.......((((..................))))((((.....))))....(((((.....)))))))))))).))). ( -27.67)
>DroPse_CAF1 2980 96 - 1
C--CCGCUUUUGUUCUUGCCAACAUUU-AAUUUCCCCU---CUUUUGUUUUUGCAGUGGGGAGAGAUGCCCACCUCAGUGGCAUACAUUGGCACUGGACAAA
.--.....(((((((.((((((.....-..(((((((.---...((((....)))).))))))).(((((.((....)))))))...))))))..))))))) ( -33.00)
>DroSec_CAF1 2437 95 - 1
---UAGCUAUUU-GUUGGCCAGUGUGU-AAUACA--UUUUCUUUAAUCCCUCUUAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA
---......(((-(((.(((((((((.-......--...((((...((((.......)))).)))).(.((((....)))).))))))))))....)))))) ( -27.90)
>DroEre_CAF1 16025 96 - 1
---CACCUAUUAAGUUGGCCAGCGUGUUAAUACACUUU---UUUAUUCCCUUUUAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA
---..((..((((((.(((((.(((((....))))...---..............(((((........)))))...).))))).)).))))....))..... ( -25.10)
>DroYak_CAF1 271 98 - 1
---CAUCUAUUUAUUUGGUCAGCGUGUUAAUAAACUUU-UUUUUAAUCCCUCUCAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA
---..............(((...((((((((.......-.......((((((.....)))).))...(.((((....)))).)...))))))))..)))... ( -22.80)
>DroMoj_CAF1 2746 91 - 1
UGCAAUCUAUAUC---------UAUAUUAAUCUAUUUA-U-AUUCUUCCUUUGCAGUGGGGUGAAAUGCCUACCUCGGUGGCCUACAUUGGCACUGGACAAA
(((((...((((.---------.(((......)))..)-)-)).......)))))(((((........))))).((((((.((......))))))))..... ( -18.10)
>consensus
___CAGCUAUUUAGUUGGCCAGCGUGUUAAUACACUUU_U_UUUAUUCCCUCUCAGUGGGGCGAGAUGCCCACCUCGGUGGCCUACAUUGGCACUGGACAAA
.....................................................(((((((((.....))))...((((((.....)))))))))))...... (-16.56 = -15.95 +  -0.61) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:26 2006