Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,056,363 – 22,056,457 |
Length | 94 |
Max. P | 0.967326 |
Location | 22,056,363 – 22,056,457 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.24 |
Mean single sequence MFE | -32.04 |
Consensus MFE | -19.18 |
Energy contribution | -19.12 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.21 |
Mean z-score | -3.78 |
Structure conservation index | 0.60 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967326 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22056363 94 + 23771897 AAAAAGGCCAAAAGCUUAAGCC--UCGUGCGGUCAACAAAAAGCCGGCCGCAAUGGGAAAAAUAAAUACGGGCUCAGGCUG-------UUGG-UCG-UGGAUAAA---------- .....((((((.(((((.((((--.(((((((((...........)))))).((.......))....))))))).))))).-------))))-)).-........---------- ( -32.50) >DroPse_CAF1 53886 90 + 1 AAAAAGGCCAAAAGCUUAAGCCCCCCGUGCGGUCAACAAAAAGCUGGCCGCAAUGGGAAAAAUAAAUACGGGCUCAGGCUG-------UU--------GGAUGAA---------- .......((((.(((((.(((((((((((((((((.(.....).))))))).)))))............))))).))))).-------))--------)).....---------- ( -37.10) >DroGri_CAF1 42830 108 + 1 ---AAGGCCAAAAGCUUAAGCC--UUAUGCGGUCAACAA-AAGCCGGCCGCAAUGGGAAAAAUAAAUAUGGGCUCAGUGCCAGUGCCAGUGCACUA-UGGGCAAAAAUCCAUCUG ---.((((.....))))...((--(..(((((((.....-.....)))))))..)))..........(((((.....(((((((((....))))).-..))))....)))))... ( -30.70) >DroEre_CAF1 41793 94 + 1 AAAAAGGCCAAAAGCUUAAGCC--UCGUGCGGUCAACAAAAAGCCGGCCGCAAUGGGAAAAAUAAAUACGGGCUCAGGCUG-------UUGG-UCC-UGGAUGAA---------- ....(((((((.(((((.((((--.(((((((((...........)))))).((.......))....))))))).))))).-------))))-.))-).......---------- ( -32.10) >DroYak_CAF1 45683 94 + 1 AAAAAGGCCAAAAGCUUAAGCC--UCGUGCGGUCAACAAAAAGCCGACCGCAAUGGGAAAAAUAAAUACAGGCUCAGGCUG-------UGGG-CCG-UGGAUAAA---------- .....((((...(((((.((((--...(((((((...........))))))).((.............)))))).))))).-------..))-)).-........---------- ( -33.02) >DroAna_CAF1 59518 94 + 1 -AAAAGGGCAAAAGCUUAAGCC--UCGUGCGGUCAACAAAAAAGCGGCCGCAGUGGGAAAAAUAAAUACGGGCUCAGGCUG-------UUGG-ACGCUGGAUAAA---------- -....(..(((.(((((.((((--(..(((((((...........)))))))(((...........)))))))).))))).-------))).-.)..........---------- ( -26.80) >consensus AAAAAGGCCAAAAGCUUAAGCC__UCGUGCGGUCAACAAAAAGCCGGCCGCAAUGGGAAAAAUAAAUACGGGCUCAGGCUG_______UUGG_CCG_UGGAUAAA__________ ............(((((.((((..((((((((((...........))))))).)))..............)))).)))))................................... (-19.18 = -19.12 + -0.05)
Location | 22,056,363 – 22,056,457 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.24 |
Mean single sequence MFE | -31.49 |
Consensus MFE | -18.36 |
Energy contribution | -18.45 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.17 |
Mean z-score | -3.73 |
Structure conservation index | 0.58 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22056363 94 - 23771897 ----------UUUAUCCA-CGA-CCAA-------CAGCCUGAGCCCGUAUUUAUUUUUCCCAUUGCGGCCGGCUUUUUGUUGACCGCACGA--GGCUUAAGCUUUUGGCCUUUUU ----------........-.(.-((((-------.(((.(((((((((................((((.((((.....)))).))))))).--)))))).))).)))).)..... ( -28.89) >DroPse_CAF1 53886 90 - 1 ----------UUCAUCC--------AA-------CAGCCUGAGCCCGUAUUUAUUUUUCCCAUUGCGGCCAGCUUUUUGUUGACCGCACGGGGGGCUUAAGCUUUUGGCCUUUUU ----------.....((--------((-------.(((.(((((((............(((..(((((.((((.....)))).))))).)))))))))).))).))))....... ( -34.80) >DroGri_CAF1 42830 108 - 1 CAGAUGGAUUUUUGCCCA-UAGUGCACUGGCACUGGCACUGAGCCCAUAUUUAUUUUUCCCAUUGCGGCCGGCUU-UUGUUGACCGCAUAA--GGCUUAAGCUUUUGGCCUU--- ...((((.((..((((..-.(((((....)))))))))..))..))))...............(((((.((((..-..)))).))))).((--((((.........))))))--- ( -33.90) >DroEre_CAF1 41793 94 - 1 ----------UUCAUCCA-GGA-CCAA-------CAGCCUGAGCCCGUAUUUAUUUUUCCCAUUGCGGCCGGCUUUUUGUUGACCGCACGA--GGCUUAAGCUUUUGGCCUUUUU ----------.......(-((.-((((-------.(((.(((((((((................((((.((((.....)))).))))))).--)))))).))).))))))).... ( -32.69) >DroYak_CAF1 45683 94 - 1 ----------UUUAUCCA-CGG-CCCA-------CAGCCUGAGCCUGUAUUUAUUUUUCCCAUUGCGGUCGGCUUUUUGUUGACCGCACGA--GGCUUAAGCUUUUGGCCUUUUU ----------........-.((-((..-------.(((.(((((((((................(((((((((.....))))))))))).)--)))))).)))...))))..... ( -35.49) >DroAna_CAF1 59518 94 - 1 ----------UUUAUCCAGCGU-CCAA-------CAGCCUGAGCCCGUAUUUAUUUUUCCCACUGCGGCCGCUUUUUUGUUGACCGCACGA--GGCUUAAGCUUUUGCCCUUUU- ----------..........(.-.(((-------.(((.(((((((((................(((((.((......)).).))))))).--)))))).))).)))..)....- ( -23.19) >consensus __________UUUAUCCA_CGA_CCAA_______CAGCCUGAGCCCGUAUUUAUUUUUCCCAUUGCGGCCGGCUUUUUGUUGACCGCACGA__GGCUUAAGCUUUUGGCCUUUUU ...................................(((.((((((..................(((((.((((.....)))).))))).....)))))).)))............ (-18.36 = -18.45 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:08 2006