Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,056,231 – 22,056,326 |
Length | 95 |
Max. P | 0.997991 |
Location | 22,056,231 – 22,056,326 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -18.58 |
Consensus MFE | -17.86 |
Energy contribution | -17.70 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.96 |
SVM decision value | 2.98 |
SVM RNA-class probability | 0.997991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22056231 95 + 23771897 AUGCCCCACAAAUUUAAUUGUAAAUACAUAAAUCGCUUUACGAGCGUUU-UUUCGCCGGUAUAAUUUUAUGUGCUCCACCUUGGGCCCCCUUUCU--U ..((((.((((......))))...((((((((........((.(((...-...))))).......)))))))).........)))).........--. ( -18.86) >DroSec_CAF1 41129 94 + 1 AUGCCCCACAAAUUUAAUUGUAAAUACAUAAAUCGCUUUACGAGCGUUU-UUUCGCCGGUAUAAUUUUAUGUGCUCCACCUUGGGCCCCUUUCCU--- ..((((.((((......))))...((((((((........((.(((...-...))))).......)))))))).........)))).........--- ( -18.86) >DroSim_CAF1 47121 97 + 1 AUGCCCCACAAAUUUAAUUGUAAAUACAUAAAUCGCUUUACGAGCGUUU-UUUCGCCGGUAUAAUUUUAUGUGCUCCACCUUGGGCCCCCUUUCUGUU ..((((.((((......))))...((((((((........((.(((...-...))))).......)))))))).........))))............ ( -18.86) >DroEre_CAF1 41673 89 + 1 AUGCCCCACAAAUUUAAUUGUAAAUACAUAAAUCGCUUUACGAGCGUUU-UUUCGCCGGUGUAAUUUUAUGUGCUCCACCUUGGGCCCCU-------- ..((((.((((......))))...((((((((..((....((.(((...-...)))))..))...)))))))).........))))....-------- ( -19.50) >DroYak_CAF1 45562 90 + 1 AUGCCCCACAAAUUUAAUUGUAAAUACAUAAAUCGCUUUACGAGCGUUUUUUUCGCUGCUAUAAUUUUAUGUGCUCCACCUUGGGCCCCU-------- ..((((.((((......))))...(((((((((((.....)))(((.......))).........)))))))).........))))....-------- ( -16.80) >consensus AUGCCCCACAAAUUUAAUUGUAAAUACAUAAAUCGCUUUACGAGCGUUU_UUUCGCCGGUAUAAUUUUAUGUGCUCCACCUUGGGCCCCUUU_CU___ ..((((.((((......))))...((((((((........((.(((.......))))).......)))))))).........))))............ (-17.86 = -17.70 + -0.16)
Location | 22,056,231 – 22,056,326 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -21.01 |
Consensus MFE | -20.04 |
Energy contribution | -20.04 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.95 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22056231 95 - 23771897 A--AGAAAGGGGGCCCAAGGUGGAGCACAUAAAAUUAUACCGGCGAAA-AAACGCUCGUAAAGCGAUUUAUGUAUUUACAAUUAAAUUUGUGGGGCAU .--.........((((..........(((((((....(((.((((...-...)))).)))......)))))))...(((((......))))))))).. ( -21.30) >DroSec_CAF1 41129 94 - 1 ---AGGAAAGGGGCCCAAGGUGGAGCACAUAAAAUUAUACCGGCGAAA-AAACGCUCGUAAAGCGAUUUAUGUAUUUACAAUUAAAUUUGUGGGGCAU ---.........((((..........(((((((....(((.((((...-...)))).)))......)))))))...(((((......))))))))).. ( -21.30) >DroSim_CAF1 47121 97 - 1 AACAGAAAGGGGGCCCAAGGUGGAGCACAUAAAAUUAUACCGGCGAAA-AAACGCUCGUAAAGCGAUUUAUGUAUUUACAAUUAAAUUUGUGGGGCAU ............((((..........(((((((....(((.((((...-...)))).)))......)))))))...(((((......))))))))).. ( -21.30) >DroEre_CAF1 41673 89 - 1 --------AGGGGCCCAAGGUGGAGCACAUAAAAUUACACCGGCGAAA-AAACGCUCGUAAAGCGAUUUAUGUAUUUACAAUUAAAUUUGUGGGGCAU --------....((((..((((...............))))((((...-...))))((((((....))))))....(((((......))))))))).. ( -20.96) >DroYak_CAF1 45562 90 - 1 --------AGGGGCCCAAGGUGGAGCACAUAAAAUUAUAGCAGCGAAAAAAACGCUCGUAAAGCGAUUUAUGUAUUUACAAUUAAAUUUGUGGGGCAU --------....((((..........(((((((.........(((.......)))(((.....))))))))))...(((((......))))))))).. ( -20.20) >consensus ___AG_AAAGGGGCCCAAGGUGGAGCACAUAAAAUUAUACCGGCGAAA_AAACGCUCGUAAAGCGAUUUAUGUAUUUACAAUUAAAUUUGUGGGGCAU ............((((..........(((((((.........(((.......)))(((.....))))))))))...(((((......))))))))).. (-20.04 = -20.04 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:06 2006