Locus 8387

Sequence ID 3L_DroMel_CAF1
Location 22,054,667 – 22,054,764
Length 97
Max. P 0.930790
window13716

overview

Window 6

Location 22,054,667 – 22,054,764
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 92.84
Mean single sequence MFE -29.53
Consensus MFE -23.62
Energy contribution -23.50
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -3.04
Structure conservation index 0.80
SVM decision value 1.21
SVM RNA-class probability 0.930790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22054667 97 - 23771897
UGACUGCUUUUUGUUC-UUUGUGUGCAUCCGUCUGUACACAAUGGACCCUUGGGAGCAGCUCGGUUUUGUUACUGCUCUGAGCUCUCGUUAUCAUUAU
(((..((.....((((-.(((((((((......))))))))).))))......(((.(((((((....((....)).))))))))))))..))).... ( -31.10)
>DroSim_CAF1 45590 97 - 1
UGACUGCUUUUUGUUC-UUUGUGUGCAUCCGUCUGUACACAAUGGACCCUUGGGUGCAGCUCGGUUUUGUUACUGCUCUGAGCUCUCGUAAUCAUUAU
(((.(((.....((((-.(((((((((......))))))))).))))....(((...(((((((....((....)).))))))))))))).))).... ( -28.90)
>DroEre_CAF1 40184 98 - 1
UGACUGCUCCUUAUUCCUUUGUGUGCAUCCGUCUGUACACAAUGGACCCUUGGGUGCAGCUUGGUUUUGUUACUGCUCUGAGCUCUCGUUAUCAUUAU
(((((((.(((...(((.(((((((((......))))))))).))).....))).)))(((..(....((....)).)..)))....))))....... ( -29.90)
>DroYak_CAF1 44081 97 - 1
UGACUACUGCUUAUUCCAUUGUGUGCAUCCGUC-GUACACAAUGGACUCCUGGGUGCAGCUUGGUUUUGUUACUGCUCUGAGCUCUCGUUAUCAUUAU
((((....((((..((((((((((((.......-))))))))))))......((.((((.............)))).))))))....))))....... ( -28.22)
>consensus
UGACUGCUUCUUAUUC_UUUGUGUGCAUCCGUCUGUACACAAUGGACCCUUGGGUGCAGCUCGGUUUUGUUACUGCUCUGAGCUCUCGUUAUCAUUAU
(((..((...........(((((((((......)))))))))((.(((....))).))((((((....((....)).))))))....))..))).... (-23.62 = -23.50 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:04 2006