| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,054,240 – 22,054,334 |
| Length | 94 |
| Max. P | 0.643742 |
| Location | 22,054,240 – 22,054,334 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 86.14 |
| Mean single sequence MFE | -21.17 |
| Consensus MFE | -17.61 |
| Energy contribution | -17.28 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22054240 94 - 23771897 ------UCUCUUUUGGGGAUAAGAAAAACCCGCAAUUAGAAGCGAGUAGCAAAUUUAAGUGGCAAUCCCGCCGCCCUCUGCCCACUUUCAACCGCU--CCCC ------........(((((........((.(((........))).)).(((.......(((((......)))))....)))..............)--)))) ( -20.40) >DroPse_CAF1 51600 84 - 1 CUGCUCUCUCUUUUGGGGAUAGGAAAAACCCGCAAUUAGAAGUGAGUAGCAAAUUUAAGUGGCAACUCCGCCACCCCUCCCAUA------------------ .(((((((.(((((((.....((......))....))))))).))).)))).......(((((......)))))..........------------------ ( -23.90) >DroSec_CAF1 39120 96 - 1 ------UCUCUUUUGGGGAUAAGAAAAACCCGCAAUUAGAAGCGAGUAGCAAAUUUAAGUGGCAAUCCCGCCGCCCUCUCCCCACUUUCAACCACUCUCCCC ------.......((((((........((.(((........))).))...........(((((......)))))....)))))).................. ( -22.00) >DroSim_CAF1 45114 94 - 1 ------UCUCUUUUGGGGAUAAGAAAAACCCGCAAUUAGAAGCGAGUAGCAAAUUUAAGUGGCAAUCCCGCCGCCCUCCCCCCACUUUCAACCACU--ACCC ------.......(((((.........((.(((........))).))...........(((((......))))).....)))))............--.... ( -20.80) >DroEre_CAF1 39762 94 - 1 ------UCUCUUUUGGGGAUAAGAAAAACCCGCAAUUAGAAGCGAGUAGCAAAUUUAAGUGGCAAUCCCGCCGCCCUCCCCCCACUUUCAACCAUU--CCCC ------.......(((((.........((.(((........))).))...........(((((......))))).....)))))............--.... ( -20.80) >DroYak_CAF1 43640 94 - 1 ------UCUCUUUUGGGGAUAAGAAAAACCCGCAAUUAGAAGCGAGUAGCAAAUUUAAGUGGCAAUCCCGCCGCCCUCUCCCAACUUUCAACCAUU--CACC ------......(((((((........((.(((........))).))...........(((((......)))))..)).)))))............--.... ( -19.10) >consensus ______UCUCUUUUGGGGAUAAGAAAAACCCGCAAUUAGAAGCGAGUAGCAAAUUUAAGUGGCAAUCCCGCCGCCCUCCCCCCACUUUCAACCACU__CCCC ..............(((((........((.(((........))).))...........(((((......)))))..)))))..................... (-17.61 = -17.28 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:03 2006