Locus 8385

Sequence ID 3L_DroMel_CAF1
Location 22,046,229 – 22,046,336
Length 107
Max. P 0.968995
window13714

overview

Window 4

Location 22,046,229 – 22,046,336
Length 107
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 85.21
Mean single sequence MFE -39.64
Consensus MFE -29.40
Energy contribution -30.28
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -2.60
Structure conservation index 0.74
SVM decision value 1.63
SVM RNA-class probability 0.968995
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22046229 107 + 23771897
UCACAGUGGACAAAGGUUCAUUG---GAAAAACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGGUCCAAGCUACUCAUCGCAGUAGGGAACGCAUUUAUUGCC
((.((((((((....))))))))---)).........((((((((((((((((((((....))))))....)))...(((((......)))))))))))))......))) ( -42.80)
>DroSec_CAF1 31180 107 + 1
UCACAGUGGACAAAGGUUCAUUG---GAAAAACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGCGCCGAGCUGCUCAUCGCAGUAGGGAAAGCAUUUAUUGCC
((.((((((((....))))))))---))....(((...((((((.......((((((....))))))((((((...)).))))..)))))).)))...(((.....))). ( -41.10)
>DroSim_CAF1 36879 107 + 1
UCACAGUGGACAAAGGUUCAUUG---GAAAAACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGCGCCGAGCUGCUCAUCGCAGUAGGGAACGCAUUUAUUGCC
((.((((((((....))))))))---)).........(((((((((((((.((((((....)))))).....))..(((((.....)))))..))))))))......))) ( -45.20)
>DroEre_CAF1 31882 101 + 1
UCACAGUGGACAAAGGUUCAUUGGGGGAGGAACUCGAGGCUCCGUUUCGGAGGAAGGUGAUCCCUCCGAGC-------UCCUCGUGGAA--AAGAAACGCAUUUAUUGCG
(((((((((((....)))))))....(((((.((((((((...)))))(((((.........)))))))).-------)))))))))..--......((((.....)))) ( -36.00)
>DroYak_CAF1 35186 100 + 1
UCACAUUGGACAAAGGUUCAUUU---GAGGAACUCAAGGCUGCGUUUCGGAGGAGGGUCAUCCCUCCGAGC-------UCCUAAUGGCAGUAAGGAACGCAUUUAUUGCU
......(((((....)))))(((---(((...))))))..((((((((...((((((....))))))..((-------(((....)).)))..))))))))......... ( -33.10)
>consensus
UCACAGUGGACAAAGGUUCAUUG___GAAAAACUCAAGGCUGCGUUCCGGAGGAGGGUCAUCCCUCCGAGC_CC_AGCUCCUCAUCGCAGUAGGGAACGCAUUUAUUGCC
...((((((((....))))))))..............(((((((((((...((((((....))))))(((..........)))..........))))))))......))) (-29.40 = -30.28 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:14:02 2006