Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,029,182 – 22,029,287 |
Length | 105 |
Max. P | 0.645852 |
Location | 22,029,182 – 22,029,287 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -21.58 |
Consensus MFE | -16.69 |
Energy contribution | -18.00 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.11 |
Mean z-score | -1.85 |
Structure conservation index | 0.77 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22029182 105 - 23771897 UAUAGGAAAGAGCUCAAACUCACUACUUCAACUGCAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGU ..((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... ( -23.30) >DroSec_CAF1 19926 103 - 1 --UGGGAAAGAGCUCAAACUCACUACUUCAACUACAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGC --((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... ( -23.10) >DroSim_CAF1 24668 105 - 1 UAUGGGAAAGAGCUCAAACUCACUACUUCAACUGCAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGU ..((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... ( -23.00) >DroEre_CAF1 20905 105 - 1 UGCCUUAAAGAGCUCAAACUCACUACUUUGAGUGCAACAAUUGUGCAACUGAUAGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAAAUUCCUACAAUGGU .(((.....(((((...(((((......)))))(((.(....)))).......)))))...............((((.....))))................))) ( -16.90) >consensus UAUGGGAAAGAGCUCAAACUCACUACUUCAACUGCAAUAAUUGUGCAAUUGAUGGCUCAAUGACUUUCUAAUUCACAAUUAAUGUGUUAAGAUUCCUACAAUGGU ..((((((.(((......)))....(((.(((.(((.((((((((.((((((.(((.....).)).)).)))))))))))).))))))))).))))))....... (-16.69 = -18.00 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:59 2006