Locus 8382

Sequence ID 3L_DroMel_CAF1
Location 22,028,969 – 22,029,066
Length 97
Max. P 0.999914
window13709

overview

Window 9

Location 22,028,969 – 22,029,066
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.12
Mean single sequence MFE -24.94
Consensus MFE -23.96
Energy contribution -23.96
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -2.39
Structure conservation index 0.96
SVM decision value 4.52
SVM RNA-class probability 0.999914
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22028969 97 - 23771897
AUUUACGGCGCUUUUUUCUUGGUGGGCUACUUCGAUAGAUUGCAUUCGCAAUUUGCAUUUGAAUAUUUCAAACACGAAUCUAAAACCGCCAGCCAGC
......(((..........((((((.....((((.((((((((....))))))))..(((((.....)))))..)))).......)))))))))... ( -23.20)
>DroSec_CAF1 19711 97 - 1
ACUUUCGGCGCUUUUUUCUCGGUGGGAUACUUCGAUAGAUUGCAUUCGCAAUUUGCAUUUGAAUAUUUCAAACACGAAUCUAAAACCGCCAGCCAGC
......((((.((((...(((.((..(((.(((((((((((((....))))))))...))))))))..))....)))....)))).))))....... ( -25.70)
>DroSim_CAF1 24453 97 - 1
ACUUACGGCGCUUUUUUCUCGGUGGGAUACUUCGAUAGAUUGCAUUCGCAAUUUGCAUUUGAAUAUUUCAAACACGAAUCUAAAACCGCCAGCCAGC
......((((.((((...(((.((..(((.(((((((((((((....))))))))...))))))))..))....)))....)))).))))....... ( -25.70)
>DroEre_CAF1 20686 97 - 1
UUUUGCGGCGUUUUUUUCUCGGUGGGAUACUUCGAUAAAUUGCAUUUGCAAUUUGCAUUUGAAUAUUUCAAACACGAAUCUAAAACCGCCAGCCAGC
....((((((.((((...(((.((..(((.(((((((((((((....))))))))...))))))))..))....)))....)))).)))).)).... ( -26.70)
>DroYak_CAF1 23648 97 - 1
UUUUCCGGCGUUUUUUCCUCCGUGGGAUACUUCGAUAAAUUGCAAUCGCAAUUUGCAUUUGAAUAUUUCAAACACGAAUCUAAAACCGCCAGCCAGC
......((((.((((.....((((.((...(((((((((((((....))))))))...)))))....))...)))).....)))).))))....... ( -23.40)
>consensus
AUUUACGGCGCUUUUUUCUCGGUGGGAUACUUCGAUAGAUUGCAUUCGCAAUUUGCAUUUGAAUAUUUCAAACACGAAUCUAAAACCGCCAGCCAGC
......((((.((((...(((.(((((((.(((((((((((((....))))))))...))))))))))))....)))....)))).))))....... (-23.96 = -23.96 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:58 2006