Locus 8381

Sequence ID 3L_DroMel_CAF1
Location 22,022,782 – 22,022,881
Length 99
Max. P 0.729173
window13708

overview

Window 8

Location 22,022,782 – 22,022,881
Length 99
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.41
Mean single sequence MFE -26.42
Consensus MFE -17.17
Energy contribution -16.75
Covariance contribution -0.42
Combinations/Pair 1.12
Mean z-score -2.27
Structure conservation index 0.65
SVM decision value 0.42
SVM RNA-class probability 0.729173
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22022782 99 - 23771897
AUUAAUAUACAGACAGAUGUGCGU----AUGUGUG--------UAAGUGGCACUUGACUUGUUCGACAUAAACAUGAAAAUGAUGAUGUCACAUUUGCACAAUUGUGCGUA
........(((......)))((((----((.((((--------(((((((((.......)))..(((((...(((....)))...))))).))))))))))...)))))). ( -27.30)
>DroPse_CAF1 26520 98 - 1
CAUUAUAUAUG-----AGCUGCUUAUGUGUGUGUG--------UAAGUGGCACUUGACUUGUUCGACAUAAACAUGAAAAUGAUGAUGUCACAUUUGCACAAUUGUGCGUA
...((((((((-----((...))))))))))((((--------(((((((((.......)))..(((((...(((....)))...))))).)))))))))).......... ( -26.10)
>DroSec_CAF1 13527 95 - 1
AUUAAUAUA----CAGAGGUGCGU----AUGUGUG--------UAAGUGGCACUUGACUUGUUCGACAUAAACAUGAAAAUGAUGAUGUCACAUUUGCACAAUUGUGCGUA
.........----......(((((----((.((((--------(((((((((.......)))..(((((...(((....)))...))))).))))))))))...))))))) ( -27.20)
>DroYak_CAF1 16740 99 - 1
AUUAAUAUACAAACACGGGUACGU----AUGUGUG--------UAAGUGGCACUUGACUUGUUCGACAUAAACAUGGAAAUGAUGAUGUCACAUUUGCACAAUUGUGCGUA
...................(((((----((.((((--------(((((((((.......)))..(((((...(((....)))...))))).))))))))))...))))))) ( -27.20)
>DroAna_CAF1 26011 101 - 1
-----CCUCCACACGUAUGUACAU----AUGUAUGUAAGGGCGCAAGUGGCACUUGACUUGUUCGACAUAAACAUGAAAAUGAUGAUGUCACAUUUGCACAAUUG-GCGUA
-----(((.((.((((((....))----)))).))..)))((((...(((((...((.....))(((((...(((....)))...))))).....))).))....-)))). ( -24.60)
>DroPer_CAF1 26572 98 - 1
CAUUAUAUAUG-----AGCUGCUUAUGUGUGUGUG--------UAAGUGGCACUUGACUUGUUCGACAUAAACAUGAAAAUGAUGAUGUCACAUUUGCACAAUUGUGCGUA
...((((((((-----((...))))))))))((((--------(((((((((.......)))..(((((...(((....)))...))))).)))))))))).......... ( -26.10)
>consensus
AUUAAUAUACA__CA_AGGUGCGU____AUGUGUG________UAAGUGGCACUUGACUUGUUCGACAUAAACAUGAAAAUGAUGAUGUCACAUUUGCACAAUUGUGCGUA
...................(((......((((...........(((((........)))))...(((((...(((....)))...)))))))))..((((....))))))) (-17.17 = -16.75 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:57 2006