Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,020,432 – 22,020,526 |
Length | 94 |
Max. P | 0.552995 |
Location | 22,020,432 – 22,020,526 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 92.02 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -16.45 |
Energy contribution | -16.61 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.30 |
Structure conservation index | 0.83 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22020432 94 + 23771897 CACUCAGGUUUCUCUGUUUGUUCCGCCUUGCAACCGAGAACGACCUUGGCAACAACAACACCAAC---AACAAUGACGCCAACAUGAGCUGAUCCAA ((((((((((((((.(((.((........))))).))))..))))(((((..((...........---.....))..)))))..)))).))...... ( -18.79) >DroSec_CAF1 11172 94 + 1 CACUCAGGUUUCUCUGUUUGUUCCGCCUUGCAGCCGAGAACGACCUUGGCAACAACAACACCAAC---AACAAUGACGCCAACAUGAGCUGAUCCAA (((((((((.((..((((.(((..((...)).((((((......))))))............)))---))))..)).)))....)))).))...... ( -20.70) >DroSim_CAF1 12240 94 + 1 CACUCAGGUUUCUCUGUUUGUUCCGCCUCGCAGCCGAGAACGACCUUGGCAACAACAACACCAAC---AACAAUGACGCCAACAUGAGCUGAUCCAA (((((((((.((..((((.(((..((...)).((((((......))))))............)))---))))..)).)))....)))).))...... ( -20.70) >DroEre_CAF1 12519 85 + 1 CACUCAGGUUUCUCUGUUGGUUCCGCCUUGCAGCCGAGAACGACCUUGGCAACAACAA------------CAAUGACUCCAACAUGAGCUGAUCCAA ...((((....(((((((((.((.((...)).((((((......))))))........------------....))..)))))).)))))))..... ( -22.30) >DroYak_CAF1 12374 97 + 1 CACUCAGGUUUCUCUGUUAGUUCCGCCUUGCAACCAAGAACGACCUUGGCAACAACAACACCGACAAGAACAAUGACGCCAACAUGAGCUGAUCCAA (((((((((.((..((((.(((.....(((...(((((......)))))...))).......)))...))))..)).)))....)))).))...... ( -16.40) >consensus CACUCAGGUUUCUCUGUUUGUUCCGCCUUGCAGCCGAGAACGACCUUGGCAACAACAACACCAAC___AACAAUGACGCCAACAUGAGCUGAUCCAA ((((((((((((((.(((.((........))))).))))..))))(((((..((...................))..)))))..)))).))...... (-16.45 = -16.61 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:56 2006