Locus 838

Sequence ID 3L_DroMel_CAF1
Location 2,538,441 – 2,538,547
Length 106
Max. P 0.996850
window1289

overview

Window 9

Location 2,538,441 – 2,538,547
Length 106
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 94.30
Mean single sequence MFE -19.17
Consensus MFE -19.39
Energy contribution -19.17
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -3.18
Structure conservation index 1.01
SVM decision value 2.76
SVM RNA-class probability 0.996850
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2538441 106 - 23771897
CCCCGUAUUUAGUAAUGUUCAUCCAAGCAAAAUGGAAAGAUAAGUGCACCAACAUGCACGUCUAAAGCAACAAAAAAAAAAAAUAAAAGAAUUAGUAAUAAAUGCU
....(((((((.((..((((.((((.......)))).((((..(((((......))))))))).........................))))...)).))))))). ( -19.30)
>DroSim_CAF1 159162 104 - 1
CCCCGUAUUUAGUAAUGUUCAUCCACGCAAAAUGGAAAGAUAAGUGCACCAACAUGCACGUCUAAAACAACAAAAA--AAGAAUAAAAGAAUUAGUAAUAAAUGCU
....(((((((.((..((((.((((.......)))).((((..(((((......))))))))).............--..........))))...)).))))))). ( -19.10)
>DroYak_CAF1 161555 104 - 1
CCCCGUAUUUAGUAAUGUUCAUCCAAGCAAAAUGGAAAGAUAAGUGCACUAAACUGCACAUCUAAAACAACAAAAA--AAGAAUAAAAGAAUUAGUAAUAAAUGCU
....(((((((.((..((((.((((.......)))).((((..(((((......))))))))).............--..........))))...)).))))))). ( -19.10)
>consensus
CCCCGUAUUUAGUAAUGUUCAUCCAAGCAAAAUGGAAAGAUAAGUGCACCAACAUGCACGUCUAAAACAACAAAAA__AAGAAUAAAAGAAUUAGUAAUAAAUGCU
....(((((((.((..((((.((((.......)))).((((..(((((......))))))))).........................))))...)).))))))). (-19.39 = -19.17 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:25 2006