Locus 8379

Sequence ID 3L_DroMel_CAF1
Location 22,016,468 – 22,016,574
Length 106
Max. P 0.757476
window13706

overview

Window 6

Location 22,016,468 – 22,016,574
Length 106
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 76.92
Mean single sequence MFE -27.30
Consensus MFE -11.55
Energy contribution -11.30
Covariance contribution -0.25
Combinations/Pair 1.07
Mean z-score -2.27
Structure conservation index 0.42
SVM decision value 0.49
SVM RNA-class probability 0.757476
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22016468 106 - 23771897
UCUGGC-GAUGAUCUCGCUCGUGGGACAGAUUCGGCU-UCCAGCCGGUCUGUGGCACAAUUAAAUUAUACACAGUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
.(((((-((.....))))..(((..((((((.((((.-....))))))))))..)))..............)))....(..((((((((....)).))))))..)... ( -33.80)
>DroPse_CAF1 19243 104 - 1
CUUUUUCCAGGACUCCGUUU-C-GUCU-UGUUUGUCUUGGCCUU-UUGCUGUGACAAAAUUACAUUUUACACAUUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
.......((((((.......-.-))))-))((((((.((((...-..)))).))))))....(((.(((((((......)))))))(((....))).....))).... ( -24.70)
>DroSec_CAF1 7426 105 - 1
UCUGGC-GAUGAUCUCGCUCGUGGGACAGAUUCGGCU-UCCAGC-GGCCUGUGGCAAAAUUAAAUUAUACACAGUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
....((-((.....))))((((((.((((((((((((-......-))))((((................))))).))))))).)(((((....)))))..)))))... ( -25.59)
>DroYak_CAF1 9108 106 - 1
UCUGGC-GAUGAUCUCGCUCGUGGCGCAGAUUCGGCU-UCCAACCGGCCUGUGGCAAAAUUAAAUUAUACACAGUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
....((-((.....))))(((((((((((((((((((-.......))))((((................))))).)))))))))(((((....)))))..)))))... ( -28.89)
>DroAna_CAF1 8940 105 - 1
CUUUGU-AACGAUACCGCUUGCGGUAUAACUUUGUUU-CCCAUU-UCACUGUGACAAAAUUUAAUUUUACACAUUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
...(((-((..((((((....)))))).....(((((-(((((.-.....)))............((((((((......)))))))).)))))))..)))))...... ( -26.10)
>DroPer_CAF1 19246 104 - 1
CUUUUUCCAGGACUCCGUUU-C-GUCU-UGUUUGUCUUGGCCUU-UUGCUGUGACAAAAUUACAUUUUACACAUUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
.......((((((.......-.-))))-))((((((.((((...-..)))).))))))....(((.(((((((......)))))))(((....))).....))).... ( -24.70)
>consensus
CCUGGC_GAUGAUCCCGCUCGCGGUACAGAUUCGGCU_UCCAUC_GGCCUGUGACAAAAUUAAAUUAUACACAGUAAUUUGUGUAAGUGGAAACAUUUUACAUGACAU
.................................................(((((.............((((((......))))))((((....)))))))))...... (-11.55 = -11.30 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:55 2006