Locus 8376

Sequence ID 3L_DroMel_CAF1
Location 22,007,309 – 22,007,414
Length 105
Max. P 0.591043
window13699

overview

Window 9

Location 22,007,309 – 22,007,414
Length 105
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 88.38
Mean single sequence MFE -31.51
Consensus MFE -26.74
Energy contribution -27.19
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.77
Structure conservation index 0.85
SVM decision value 0.12
SVM RNA-class probability 0.591043
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22007309 105 - 23771897
GAGCUGGACCAUAUUCAGCUUUGAAAACAGUUUGGUCCUCAGCGGUUUCAUAUCUGCGCUCUCUUCUAAAUUGGGCAACUACACCGAAAUGGGGGAAGGCAACAC------
((((.((((((.....((((.(....).))))))))))...((((........))))))))(((((((..((((.........))))..))))))).(....)..------ ( -31.40)
>DroSec_CAF1 9883 111 - 1
GAGCUGGACCAUCUUCAGCUUUCAAAACAUAUUCGUCCCCAGCGGUGUCAUACUUGCGCUCUCUUCUAAAUUGGGCAACUACACCGAAAUGGGGCAAGGCACCACAGGCUA
((((((((.....)))))))).............(.(((((.((((((.....((((.(.............).))))..))))))...))))))..(((.......))). ( -32.32)
>DroSim_CAF1 8615 103 - 1
GAGCUGGACCAUCUUCAGCUUUCAAAACAUAUUCGUCCCCAGCGGUGUCAUACUUGCGCUCUCUUCUAAAUUGGGCAACUACACCGAAAUGGGGCAAGGCACC--------
((((((((.....)))))))).............(.(((((.((((((.....((((.(.............).))))..))))))...))))))........-------- ( -30.82)
>consensus
GAGCUGGACCAUCUUCAGCUUUCAAAACAUAUUCGUCCCCAGCGGUGUCAUACUUGCGCUCUCUUCUAAAUUGGGCAACUACACCGAAAUGGGGCAAGGCACCAC______
((((((((.....))))))))...............(((((.((((((.....((((.(.............).))))..))))))...)))))................. (-26.74 = -27.19 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:49 2006