Locus 8373

Sequence ID 3L_DroMel_CAF1
Location 21,995,752 – 21,995,872
Length 120
Max. P 0.923809
window13694

overview

Window 4

Location 21,995,752 – 21,995,872
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.69
Mean single sequence MFE -24.05
Consensus MFE -22.35
Energy contribution -22.60
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.93
SVM decision value 1.16
SVM RNA-class probability 0.923809
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21995752 120 + 23771897
CUUAUUUAUGUUGGUUUAAAGCUCUCCCUAACUUCUUUUCUAUUUUAACUAGGCCCUUCUCACCGCCCUGGUUCUCUCGGUCAUUAUCGUGCUGACCAUCAUCGGGAACAUCCUGGUGAU
.........(((((.............)))))..............(((((((.(.........).))))))).....(((((.........)))))(((((((((.....))))))))) ( -24.62)
>DroSec_CAF1 125710 120 + 1
CUUAUUUAUGUUUUUUCAAAACUCUCCCUAACUGGUUUUCCAUUUUAACUAGGCCCUUCUCACCGCCUUGGUUCUCUCGGUCAUUAUCGUGCUGACCAUCAUCGGGAACAUCCUGGUGAU
................................(((....)))....((((((((..........))).))))).....(((((.........)))))(((((((((.....))))))))) ( -24.40)
>DroSim_CAF1 122881 120 + 1
CUUAUUUAUGUUUUUUCAAAACUCUCCCUAACUGGUUUUCCAUUUUAACUAGGCCCUUCUCACCGCCUUGGUUCUCUCGGUCAUUAUCGUGCUGACCAUCAUCGGGAACAUCCUGGUGAU
................................(((....)))....((((((((..........))).))))).....(((((.........)))))(((((((((.....))))))))) ( -24.40)
>DroEre_CAF1 118370 117 + 1
AUUAUUUACACU---ACCAUACUCUCCCCAACUUGCUUUCUAUUUAAACUAGGCCCUUCUCACCGCCCUGGUACUCUCGGUCAUUAUCGUGCUGACCAUCAUCGGGAACAUCCUGGUGAU
............---................................((((((.(.........).))))))......(((((.........)))))(((((((((.....))))))))) ( -22.80)
>consensus
CUUAUUUAUGUUUUUUCAAAACUCUCCCUAACUGGUUUUCCAUUUUAACUAGGCCCUUCUCACCGCCCUGGUUCUCUCGGUCAUUAUCGUGCUGACCAUCAUCGGGAACAUCCUGGUGAU
..............................................((((((((..........))).))))).....(((((.........)))))(((((((((.....))))))))) (-22.35 = -22.60 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:44 2006