Locus 8371

Sequence ID 3L_DroMel_CAF1
Location 21,994,909 – 21,995,022
Length 113
Max. P 0.552555
window13691

overview

Window 1

Location 21,994,909 – 21,995,022
Length 113
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 83.76
Mean single sequence MFE -44.47
Consensus MFE -32.61
Energy contribution -33.87
Covariance contribution 1.25
Combinations/Pair 1.18
Mean z-score -1.72
Structure conservation index 0.73
SVM decision value 0.04
SVM RNA-class probability 0.552555
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21994909 113 + 23771897
GGGCAGG-GAAAGAUGCCAUCGGCAGAUCAGAUCCUGUUUGUAAAUGUCACCACAACGGUGGCGGCGGCGGCUCUAACCGCUGCGGCCGCCGUCAGCACCACAAAGUCCGGAAG
((((.((-((..((((((...))))..))...)))).(((((...(((....)))((((((((.(((((((......))))))).)))))))).......)))))))))..... ( -46.70)
>DroGri_CAF1 164995 107 + 1
G--GAUG-UCAAAAUGCCAUCGGCAGAUCAAAUCUUGUUCAUAAAUGUCACCACAACGGUGGCCGCGGCAGCGUUGACAGCAGCCGUUGCCGUCAACGGCACA----CCAGAGG
(--(.((-((((..((((..((((.((.((.....)).))........((((.....)))))))).))))...))))))...(((((((....)))))))...----))..... ( -39.70)
>DroSec_CAF1 124857 113 + 1
GGGCAGG-GAAAGAUGCCAUCGGCAGAUCAGAUCCUGUUUGUAAAUGUCACCACAACGGUGGCGGCGGCGGCUCUAACCGCUGCGGCCGCCGUCAACACCACAAAGUCCGGGAG
((((.((-((..((((((...))))..))...)))).(((((...(((....)))((((((((.(((((((......))))))).)))))))).......)))))))))..... ( -46.70)
>DroSim_CAF1 122029 113 + 1
GGGCAGG-GAAAGAUGCCAUCGGCAGAUCAGAUCCUGUUUGUAAAUGUCACCACAACGGUGGCGGCGGCGGCUCUAACCGCUGCGGCCGCCGUCAACACCACAAAGUCCGGGAG
((((.((-((..((((((...))))..))...)))).(((((...(((....)))((((((((.(((((((......))))))).)))))))).......)))))))))..... ( -46.70)
>DroEre_CAF1 117539 113 + 1
GGGCAGU-AAAAGAUGCCAUCGGCAGAUCAGAUCCUGUUUGUAAAUGUCACCACAACGGUGGCGGCGGCGGCUCUAACCGCUGCAGCCGCCGUCAGCACCACAAACUCCGGAAG
.((((..-......))))..............(((.((((((....((((((.....))))))(((((((((((........).))))))))))......))))))...))).. ( -45.00)
>DroAna_CAF1 125875 114 + 1
GCGGAGGCGGACCAUGCCCUCUGCAGAUCAGAUCCUGUUCAUAAAUGUCACCACUACGGUGGCGGCGGCGGCCCUAACCGCGGCAGCGUCCGUAGGCAGCGUAAAAUCCGGCGG
.((((((((.....))))(.((((.((.(((...))).)).............((((((..((.((.((((......)))).)).))..)))))))))).).....)))).... ( -42.00)
>consensus
GGGCAGG_GAAAGAUGCCAUCGGCAGAUCAGAUCCUGUUUGUAAAUGUCACCACAACGGUGGCGGCGGCGGCUCUAACCGCUGCGGCCGCCGUCAACACCACAAAGUCCGGAAG
(((((((.......(((.....)))........))))))).....(((.......((((((((.(((((((......))))))).)))))))).......)))........... (-32.61 = -33.87 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:41 2006