Locus 8370

Sequence ID 3L_DroMel_CAF1
Location 21,983,152 – 21,983,249
Length 97
Max. P 0.921723
window13690

overview

Window 0

Location 21,983,152 – 21,983,249
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 76.12
Mean single sequence MFE -20.30
Consensus MFE -13.45
Energy contribution -14.95
Covariance contribution 1.50
Combinations/Pair 1.17
Mean z-score -1.92
Structure conservation index 0.66
SVM decision value 1.14
SVM RNA-class probability 0.921723
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21983152 97 - 23771897
AUCAAAAUCGUUGAUUGCAUAUUUGCACUCAGCACAUUCCAUUGCGCAGCACAGCACUUACACAUAUCUUAGUCGAAGGUUUCUGCCAAAUUCGAUU
.....(((((((((.((((....)))).)))))........(((.((((...(((.(((..((........))..)))))).)))))))....)))) ( -20.90)
>DroSec_CAF1 109694 97 - 1
AUCAAAAGCGUUGAUUGCAUAUUUGCAGUCAGCACAUUCCAUUGCACAGCACAGCACUUCCACAUAUCUUAGCCGAAGGUUUCUGCCAAAUUCGAUU
.......((((((((((((....)))))))))).........(((........)))...............))(((((((....)))...))))... ( -22.40)
>DroSim_CAF1 110152 97 - 1
AUCAAAAGCGUUGAUUGCAUAUUUGCAGUCAGCACAUUCCAUUGCACAGCACAGCACUUCCACAUAUCUUAGCCGAAGGUUUCUGCCAAAUUCGAUU
.......((((((((((((....)))))))))).........(((........)))...............))(((((((....)))...))))... ( -22.40)
>DroYak_CAF1 128669 76 - 1
CUCAACAGUGUUUUUUGUAUAGUUGCAAUUAGCUAAACUGA-UGU------UAGCACUUGCACAUACCUUAGUUG--------------AUUGGAUU
..((((.(((.......))).))))(((((((((((....(-(((------..((....))))))...)))))))--------------)))).... ( -15.50)
>consensus
AUCAAAAGCGUUGAUUGCAUAUUUGCAGUCAGCACAUUCCAUUGCACAGCACAGCACUUCCACAUAUCUUAGCCGAAGGUUUCUGCCAAAUUCGAUU
.........((((((((((....)))))))))).........(((........)))..............((((((((((....)))...))))))) (-13.45 = -14.95 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:40 2006