Locus 837

Sequence ID 3L_DroMel_CAF1
Location 2,534,844 – 2,534,935
Length 91
Max. P 0.740235
window1288

overview

Window 8

Location 2,534,844 – 2,534,935
Length 91
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -25.73
Consensus MFE -18.48
Energy contribution -18.73
Covariance contribution 0.25
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.72
SVM decision value 0.45
SVM RNA-class probability 0.740235
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2534844 91 + 23771897
GUUAAUAUCAGUAGAGAUACAUAGAUAUAUA--CACCUAUAGCUA----CUA------UUG----------UGGCUAUGGGUUUUCAUUGAAAAGUCGACUAAAAAUGCCAGA
((..((.(((((.((((...(((....))).--.(((((((((((----(..------..)----------))))))))))))))))))))...))..))............. ( -22.50)
>DroSec_CAF1 157682 111 + 1
GUUAAUAUCACUACAGAUACAUAGAUAUAUA--CACCUAUAGCUAGCUACUACUGCCAUUGUGGCUGUUGCUGGCUAUGGGUUUCCAUUGAAAAGUCGAGCGAAAAUGCCAGA
((..(((((..............)))))..)--)(((((((((((((.((....(((.....))).)).)))))))))))))(((..((((....))))..)))......... ( -30.24)
>DroSim_CAF1 155523 111 + 1
GUUAAUAUCAGUACAGAUACAUAGAUAUAUU--CACCCAUAGCUAGCUACUACUGCCAUUGUGGCUGUUGCUGGCUAUGGGUUUCCAUUGAAAAGUCGAGCGAAAAUGCCAGA
.....((((......))))....(.(((.((--((((((((((((((.((....(((.....))).)).)))))))))))))(((.(((....))).))).))).))).)... ( -33.90)
>DroYak_CAF1 157968 104 + 1
GUUAAUAUCAGUACAGAUACAUAUAUAUAUAUAGACAUAUAGCUA-------UUGUCAUU--GGUUGCUGUUGGCUAUGGGUUUCCAUUGAAAAGUCGAGCGAAAAUGCCAGA
.....((((......))))..............((((........-------.)))).((--(((((((..(((((((((....)))).....))))))))).....))))). ( -16.30)
>consensus
GUUAAUAUCAGUACAGAUACAUAGAUAUAUA__CACCUAUAGCUA____CUACUGCCAUUG_GGCUGUUGCUGGCUAUGGGUUUCCAUUGAAAAGUCGAGCGAAAAUGCCAGA
.....((((......))))...............(((((((((((((.......(((.....)))....)))))))))))))(((..((((....))))..)))......... (-18.48 = -18.73 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:24 2006