Locus 8368

Sequence ID 3L_DroMel_CAF1
Location 21,975,441 – 21,975,555
Length 114
Max. P 0.683963
window13687

overview

Window 7

Location 21,975,441 – 21,975,555
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 84.93
Mean single sequence MFE -23.04
Consensus MFE -17.33
Energy contribution -17.57
Covariance contribution 0.24
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.75
SVM decision value 0.31
SVM RNA-class probability 0.683963
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21975441 114 + 23771897
GCACACUUCUGCCGACUUUCUUUUCGAGUCGCCCU-CUCCCUUGGCCUCGCCGGGCCAUUUUCGCGAUUUCCCUUCGUAAAUGUUUUUACCGGAAAUUGUUGCAAUUUAUGAUUU
(((.........((((((.......))))))....-......((((((....)))))).....(((((((((....(((((....))))).))))))))))))............ ( -27.90)
>DroSec_CAF1 102092 115 + 1
GCACAUUUCUGCCGACUUUCUUCUCGAGUCGCCCUUUUCCCUUGCCAUCACCCGGCCAUUUUCGCGAUUUCCCUUCGUAAAUGUUUUUACCGGAAAUUGUUGCAAUUUAUGAUUU
...(((...(((((((((.......))))))............(((.......))).......(((((((((....(((((....))))).))))))))).)))....))).... ( -22.30)
>DroSim_CAF1 102339 115 + 1
GCACAUUUAUGCCGACUUUCUUCUCGAGUCGCCCUUCUCCCUUGCCAUCGCCCGGCCAUUUUCGCGAUUUCCCUUCGUAAAUGUUUUUACCGGAAAUUGUUGCAAUUUAUGAUUU
(((.......((((((((.......))))).............((....))..))).......(((((((((....(((((....))))).))))))))))))............ ( -22.60)
>DroEre_CAF1 97786 102 + 1
GCGCUUUUCACCCGACUUUCCUUUCAAGUCGCCC-------------UCGCCCGGCCAUUUUCGCGAUUUCCCUUCGUAAAUGUUUUUACCGGAAACGGUUGCAAUUUAUGAUUU
.(((.........(((((.......)))))(((.-------------......))).......)))........((((((((((....((((....)))).)).))))))))... ( -25.50)
>DroYak_CAF1 118886 102 + 1
GCACAUUUCUCCGCACUUUCUUUUCAAGUCGCCC-------------UCGCCAGGCCAAUUUCGCAAUUUCCCUUCGUAAAUGUUUUUACUGGAAAUGGCUGCAAUUUAUGAUUU
(((.........((((((.......)))).))..-------------..(((..((.......)).((((((....(((((....))))).))))))))))))............ ( -16.90)
>consensus
GCACAUUUCUGCCGACUUUCUUUUCGAGUCGCCCU__UCCCUUG_C_UCGCCCGGCCAUUUUCGCGAUUUCCCUUCGUAAAUGUUUUUACCGGAAAUUGUUGCAAUUUAUGAUUU
(((..........(((((.......)))))(((....................))).......(((((((((....(((((....))))).))))))))))))............ (-17.33 = -17.57 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:37 2006