Locus 8367

Sequence ID 3L_DroMel_CAF1
Location 21,974,634 – 21,974,727
Length 93
Max. P 0.731516
window13686

overview

Window 6

Location 21,974,634 – 21,974,727
Length 93
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.42
Mean single sequence MFE -30.20
Consensus MFE -18.95
Energy contribution -20.03
Covariance contribution 1.09
Combinations/Pair 1.23
Mean z-score -1.51
Structure conservation index 0.63
SVM decision value 0.43
SVM RNA-class probability 0.731516
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21974634 93 - 23771897
AACACACCCGUUGUCGCGGGCCUUGGCGU--------AUCUGAGGUGCAUUGUUUAUGUGCUUUGGCCCGGUAAGUGGGUUUCUGAUUGCGGAAAUUAGCU
..(((.(((((....)))))..(((.((.--------..(..(((..(((.....)))..)))..)..)).))))))((((((((....)))))))).... ( -29.10)
>DroSec_CAF1 101293 84 - 1
AACAUACCCGUUGUCGCGGGCC-----------------CUAAGGUGCAUUGUUUAUGUGCUUUGGCCCGGUAAGUGGGUUUCUGAUUGCGGAAAUUAGCU
....((((((....)).(((((-----------------..((((..(((.....)))..)))))))))))))(((..(((((((....)))))))..))) ( -30.30)
>DroSim_CAF1 101523 84 - 1
AACAUACCCGUUGUCGCGGGCC-----------------CUAAGGUGCAUUGUUUAUGUGCUUUGGCCCGGUAAGUGGGUUUCUGAUUGCGGAAAUUAGCU
....((((((....)).(((((-----------------..((((..(((.....)))..)))))))))))))(((..(((((((....)))))))..))) ( -30.30)
>DroEre_CAF1 97007 91 - 1
---------GCCGUCGCGGCCC-CGGCGGAACUGAGGAUCUGAGCUGCAUUGUUUAUGUGCUCUGGCCCGGUAAGUGGGUUUCUGAUUGCGGAAAUUAGCU
---------.((((((......-)))))).((((.((.((.((((.((((.....)))))))).)))))))).(((..(((((((....)))))))..))) ( -32.40)
>DroYak_CAF1 118040 92 - 1
AGCAUACCCAUAGUCGCGGCCC-CGGUGU--------GUCUGAGGUGCAUUGUUUAUGUGCUUUGGCCCGGUAAGUGGGUUUCUGAUUGCGGAAAUUAGCU
(((..((((((..(((.((((.-(((...--------..)))(((..(((.....)))..))).)))))))...))))))(((((....)))))....))) ( -30.10)
>DroAna_CAF1 105398 86 - 1
UUCGCAGCUGGA------GCUU-GGGUGU--------AUCCGAGGCGCUUUGUUUAUGUGCUUUGGCUCGGUAAGCGGGUCUCUGAUUGCGGAAAUUAGCU
(((((((..(((------((((-(..(((--------..(((((((((.........)))))))))....)))..)))).))))..)))))))........ ( -29.00)
>consensus
AACAUACCCGUUGUCGCGGCCC__GG_GU________AUCUGAGGUGCAUUGUUUAUGUGCUUUGGCCCGGUAAGUGGGUUUCUGAUUGCGGAAAUUAGCU
......(((((....)))))...................(((((((((((.....))))))))))).......(((..(((((((....)))))))..))) (-18.95 = -20.03 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:36 2006