| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,968,019 – 21,968,128 |
| Length | 109 |
| Max. P | 0.730016 |
| Location | 21,968,019 – 21,968,128 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.43 |
| Mean single sequence MFE | -29.03 |
| Consensus MFE | -20.25 |
| Energy contribution | -22.33 |
| Covariance contribution | 2.09 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21968019 109 - 23771897 AUUCGCACACUCCGUUUU-------GCAAUGAC---ACAAUAAUUUUCUGUAGCUCCUGCUGCUCCGGUUAUUGUUCUUGCAGCUUGAGCUGGCUGCAGGCAGGAAACUCAAUUAUCUU ..............((((-------((...((.---(((((((((....(((((....)))))...)))))))))))((((((((......)))))))))))))).............. ( -30.90) >DroSec_CAF1 94208 109 - 1 AUUCGCACACUCCGUUUC-------GCAAUGAU---ACAAUAAUUUUCUGUAGCUCCUGCUGCUCCGGUUAUUGUUCUUGCAGCUUGAGCUGGCUGCAGGCAGGAAACUCAAUUAUCUU .............(((((-------((((.((.---(((((((((....(((((....)))))...))))))))))))))).(((((((....)).)))))..)))))........... ( -31.90) >DroSim_CAF1 94099 109 - 1 AUUCGCACACUCCGUUUC-------GCAAUGAU---ACAAUAAUUUUCUGUAGCUCCUGCUGCUCCGGUUAUUGUUCUUGCAGCUUGAGCUGGCUGCAGGCAGGAAACUCAAUUAUCUU .............(((((-------((((.((.---(((((((((....(((((....)))))...))))))))))))))).(((((((....)).)))))..)))))........... ( -31.90) >DroEre_CAF1 90417 109 - 1 AUUCGCACACUCCGUUUC-------GCAAUGAU---ACAAUAAUUUUGUGUAGACGCUGCUGCUCCGUUUAUUGUUCUUGCAGCUUGAGCUGGCUGCAGGCAGGAAACUCAAUUAUCUU ....(((((...((((((-------((((....---.........))))).))))).)).)))...((((.(((..(((((((((......)))))))))))).))))........... ( -27.42) >DroYak_CAF1 111031 109 - 1 AUUCGCACACUCCGUUUC-------GCAAUGAU---ACAAUAAUUGUCUGUAGCUCCUGCUGCUCCGUUUAUUGUUCUUGCAGCUUGAGCUGGCUGCAGGCAGGAAACUCAAUUAUCUU .............(((((-------((((.((.---(((((((.((...(((((....)))))..)).))))))))))))).(((((((....)).)))))..)))))........... ( -30.80) >DroAna_CAF1 96333 104 - 1 GUCAGAAUGUUCCAUUUUAUUUGCCUCUAGGUUACAACAAUAAUUGUUUGUUGAGGCUGCUGCUCAAAUUAUUGC-CUUGGUGCUU--------------CUGAAAACUCAAUUAUCCU .((((((.((.(((........(((....)))..((((((.......))))))((((................))-))))).))))--------------))))............... ( -21.29) >consensus AUUCGCACACUCCGUUUC_______GCAAUGAU___ACAAUAAUUUUCUGUAGCUCCUGCUGCUCCGGUUAUUGUUCUUGCAGCUUGAGCUGGCUGCAGGCAGGAAACUCAAUUAUCUU .............(((((..................(((((((((....(((((....)))))...))))))))).(((((((((......)))))))))...)))))........... (-20.25 = -22.33 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:34 2006