| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,953,629 – 21,953,736 |
| Length | 107 |
| Max. P | 0.566601 |
| Location | 21,953,629 – 21,953,736 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -30.25 |
| Consensus MFE | -16.47 |
| Energy contribution | -17.83 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21953629 107 - 23771897 UAUAAAAAUGCUCAUCAUGUUCGUCUACGGCCC------CAGACCAA-AGCCGAAAGGA-A-AAGCACC-AAGGACCAGACGGUCUGGACCGGGAAUCCCAUAGACACUGCAUGACC--- ..............((((((..((((((((..(------((((((..-..((....)).-.-.....(.-...).......))))))).)))((....)).)))))...))))))..--- ( -34.50) >DroSec_CAF1 79687 108 - 1 UAUAAAAAUGCUCAUCAUGUUCGUCUACGGCCC------CAGGCCAA-AGCCGAAAGGA-AAAAGCACC-AAGGACCAGUCGGUCUGGACCCGAAAUCCCAAAGACACUGCAUGUCC--- ...............(((((..((((.(((..(------((((((..-..((....)).-.........-...((....)))))))))..))).........))))...)))))...--- ( -27.90) >DroSim_CAF1 79204 108 - 1 UAUAAAAAUGCUCAUCAUGUUCGUCUACGGCCC------CAGGCCAA-AGCCGAAAGGA-AAAAGCACC-AAGGACCAGUCGGUCUGGACCCGAAAUCCCAAAGACACUGCAUGUCC--- ...............(((((..((((.(((..(------((((((..-..((....)).-.........-...((....)))))))))..))).........))))...)))))...--- ( -27.90) >DroEre_CAF1 75815 109 - 1 UAUAAAAAUGCUCAGCAUGUUCGUCUAUGGCCC------CAGGCCAAAAUCCGA----AAAAAAGCACC-GAGCACCAGACGGUCUGGACCAGAAAUCCCGAAAACACUGGAUGUUCGGU .........(((.......((((....(((((.------..))))).....)))----)....)))(((-(((((((((....((.(((.......))).)).....)))).)))))))) ( -31.90) >DroYak_CAF1 90552 110 - 1 UAUAAAAAUGCUCAGCAUGUUUGUCUAUGGCCU------CAGGCCAAAAGCCGAAAGAAAAAAAACACC-GAGGACCAGACGGUCUGGACCCGAAAUCCCAAAGACACUGUAUGUCC--- ..............(((((..(((((.(((...------..(((.....)))................(-(.((.((((.....)))).)))).....))).)))))...)))))..--- ( -25.30) >DroAna_CAF1 82710 117 - 1 UAUAAAAAUCCUGGGCAUGUUCGUCUGUGGCCCGGCCUUGAGGCCAAAAGUCGAAUGGA-AAAAUCCCCAAAAGUCCAGACGGUCUGGGAAA-AGGACUCAAAGACACUGAAGGCC-GAA ........(((..(((.....((((((.(((..((((....))))..........(((.-.......)))...))))))))))))..)))..-.((..(((.......)))...))-... ( -34.00) >consensus UAUAAAAAUGCUCAGCAUGUUCGUCUACGGCCC______CAGGCCAA_AGCCGAAAGGA_AAAAGCACC_AAGGACCAGACGGUCUGGACCCGAAAUCCCAAAGACACUGCAUGUCC___ ..............((((((..((((..((((.........))))...........................((.((((.....)))).))...........))))...))))))..... (-16.47 = -17.83 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:33 2006