| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,952,232 – 21,952,323 |
| Length | 91 |
| Max. P | 0.544522 |
| Location | 21,952,232 – 21,952,323 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 61.83 |
| Mean single sequence MFE | -18.08 |
| Consensus MFE | -6.76 |
| Energy contribution | -7.52 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21952232 91 + 23771897 ----------CACAAACACGUCUUAUCUAUCGUUAAACUCACGCACUCACCUCGAAUGGAAACAGCGAACCCAACAGGAGAAGGC-UCACCUUCGGGGGCAA--- ----------................................((.(((...(((..((....)).)))..((....)).(((((.-...)))))))).))..--- ( -16.90) >DroSec_CAF1 78300 73 + 1 ------------------------CUCUUUCUCUUAACUCACGCACUCACCUCGAAUGGAAACAGCGAUCCCAACAGGAU---CC-CAACCUUCG-GGGCAA--- ------------------------.........................(((((((((....))(.(((((.....))))---).-)....))))-)))...--- ( -17.60) >DroSim_CAF1 77811 73 + 1 ------------------------CUCUUUCUCUUAACUCACGCACUCACCUCGAAUGGAAACAGCGAUCCCAACAGGAU---CC-CAACCUUCG-GGGCAA--- ------------------------.........................(((((((((....))(.(((((.....))))---).-)....))))-)))...--- ( -17.60) >DroEre_CAF1 74426 72 + 1 -----------------------------UUCCCGAACUCACGCACUCACCUCGGAUGGAAACAACGUUCCCAACAGGAGAAGGC-UCACUUUCGGGGGCAA--- -----------------------------.(((((((.....((..((.(((.(((((....))....)))....))).))..))-.....)))))))....--- ( -20.00) >DroYak_CAF1 89188 100 + 1 UAUUUCUACAUACAAAUAUGUGAGAUUUAUCCCUGAACUCACGCACUCACCUCGGAUAAAAACAACGUUCCCAACAGGAGAAGGC-UCACCUUCGGGGG-AA--- .(((((.(((((....))))))))))...((((((((.....((..((.(((.(((............)))....))).))..))-.....))))))))-..--- ( -23.00) >DroAna_CAF1 81359 77 + 1 ---------------------------CCUCUUAGUAGUCACGCACCCGUCUCCAAAUGAAAC-GUAAAUGCAGCUGCAAAAGACAUCAUUUCCAGGGGAAGGCU ---------------------------...................((.(((((((((((...-((...(((....)))....)).))))))...))))).)).. ( -13.40) >consensus _________________________UCUAUCUCUGAACUCACGCACUCACCUCGAAUGGAAACAGCGAUCCCAACAGGAGAAGGC_UCACCUUCGGGGGCAA___ .................................................(((((((((....))......((....)).............)))))))....... ( -6.76 = -7.52 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:29 2006