Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,534,550 – 2,534,653 |
Length | 103 |
Max. P | 0.796538 |
Location | 2,534,550 – 2,534,653 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 75.51 |
Mean single sequence MFE | -27.73 |
Consensus MFE | -16.99 |
Energy contribution | -16.38 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.20 |
Mean z-score | -1.55 |
Structure conservation index | 0.61 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2534550 103 - 23771897 AAAGCGAUAUUAGCUAAGCC-UAAUGUGGCCAUUUGUGGCUUGAUUUUUAUUUGAUUGUUACA---GGGUUCACUGAACCC-----------AGGUUGCAGUUCAAUUAGUCGGUCGA ....((((....(((((...-...((..(((...((((((..((((.......))))))))))---((((((...))))))-----------.)))..))......)))))..)))). ( -30.60) >DroPse_CAF1 195884 108 - 1 AAAGCGAUAUUAGCGAGACUUUAAUGGGACCAUUUGCGGUUUAGUUUUAAUUUGAUCUUUGCGCAUAGGUUCAAUGAACCCCCAACCCCCCUUGAUUGCAGCUAAUUU---------- ........((((((..(...((((.(((......((((.(..((.((......)).))..)))))..(((((...))))).......))).))))...).))))))..---------- ( -19.90) >DroSec_CAF1 157389 103 - 1 AAAGCGAUAUUAGCUAAGCC-UAAUGUGGCCAUUUGUGGCUUCAUUUUUAUUUGAUCUUUACA---GGGUUCACUGAACCC-----------AGAUUGCAGUUCAAUUAGUCGCUCGA ..(((((((((((((..((.-.((((.(((((....))))).)))).......(((((.....---((((((...))))))-----------))))))))))).)))..))))))... ( -26.70) >DroSim_CAF1 155229 103 - 1 AAAGCGAUAUUAGCUAAGCC-UAAUGUGGCCAUUUGUGGCUUGAUUUUUAUUUGAUCUUUACA---GGGUUCACUGAACCC-----------AGGUUGCAGUUCAAUUAGUCGCUCGA ..(((((((((((((.((((-(..((((((((....))))..((((.......))))..))))---((((((...))))))-----------)))))..)))).)))..))))))... ( -30.80) >DroYak_CAF1 157676 103 - 1 AAAGCGAUAUUAGCUAAGCC-UAAUGCGGCCAUUUGGGGCUUGAUUUUUAUUGGCUGUUUACG---GGGUUCACUGAACCC-----------AGAUUGCAGUUAGCUUUGUCGCUCAA ..(((((((..(((((((((-(((((....))))..)))))))........(((((((.....---((((((...))))))-----------.....)))))))))).)))))))... ( -37.00) >DroPer_CAF1 194808 104 - 1 AAAGCGAUAUUAGCGAGACUUUAAUGGGACCAUUUGCGGUUUAGUUUUAAUUUGAUCUUUGCGCAUAGGUUCAAUGAACCCC----CCCCCUUGAGUGCAGCUAAUUU---------- ........((((((...((((....(((......((((.(..((.((......)).))..)))))..(((((...)))))..----..)))..))))...))))))..---------- ( -21.40) >consensus AAAGCGAUAUUAGCUAAGCC_UAAUGUGGCCAUUUGUGGCUUGAUUUUUAUUUGAUCUUUACA___GGGUUCACUGAACCC___________AGAUUGCAGUUAAAUUAGUCGCUCGA ...(((((.......(((((..((((....))))...)))))........................((((((...)))))).............)))))................... (-16.99 = -16.38 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:23 2006