Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,943,411 – 21,943,505 |
Length | 94 |
Max. P | 0.964737 |
Location | 21,943,411 – 21,943,505 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 92.48 |
Mean single sequence MFE | -34.90 |
Consensus MFE | -30.05 |
Energy contribution | -30.33 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.17 |
Mean z-score | -2.34 |
Structure conservation index | 0.86 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21943411 94 - 23771897 AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCGGUCC ..........(((.......((((((.((((....(((........))).)))).)))..(((((....)))))))).((((....))))))). ( -37.50) >DroSec_CAF1 65037 94 - 1 AACAAUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCCGUCC ........((((.(((...(((((((.((((....(((........))).)))).)))..(((((....))))).....))))..))))))).. ( -35.90) >DroSim_CAF1 69875 94 - 1 AACAAUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCCGUCC ........((((.(((...(((((((.((((....(((........))).)))).)))..(((((....))))).....))))..))))))).. ( -35.90) >DroEre_CAF1 65145 94 - 1 AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCGGGCCGGCCACCUGGGGAAACCCAGAGCGCGACUUUUGUCGGUCC ...........((.........((((.(((((...(((........)))))))).)))).(((((....))))).)).((((....)))).... ( -39.90) >DroYak_CAF1 80607 88 - 1 AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCAACUUUUGU------ .(((.......((.........((((.((((....(((........))).)))).)))).(((((....)))))...))......)))------ ( -33.02) >DroAna_CAF1 72934 92 - 1 AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGACUUUAAUUUGCCUGGCCAGCCACCUGGGGAAAUGCGAAACGCGACUU--GCCAGUCC .........(((((..(((((.((((.(((.(((.(.(........)))))))).)))).)))))....((((...))))...)--)))).... ( -27.20) >consensus AACAUUUCAUGGCAUAUUUAGUUGGCGGGCUCAGUGGCUUUAAUUUGCCUGGCCGGCCACCUGGGGAAACCCGGAACGCGACUUUUGUCCGUCC ..........((((.....(((((((.((((....(((........))).)))).)))..(((((....))))).....))))..))))..... (-30.05 = -30.33 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:25 2006