Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,938,514 – 21,938,619 |
Length | 105 |
Max. P | 0.943988 |
Location | 21,938,514 – 21,938,619 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.81 |
Mean single sequence MFE | -43.10 |
Consensus MFE | -22.00 |
Energy contribution | -23.28 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.28 |
Mean z-score | -2.50 |
Structure conservation index | 0.51 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21938514 105 - 23771897 UGCCCCGGUCCUUGGAGUAUGCUCAACCCGGAUAAGCCGG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA (((((.((((...((.((..(((((((((((.....))))--...)).)))))..))))))))((((((((((((.....)))))))......)))))...))))). ( -46.10) >DroSec_CAF1 59771 105 - 1 UGCCCCGGUCCUUGGGGUAUGCUCAGCCCGGAUAAGCCGG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA (((((.((((....((((..(((((((((((.....))))--...).))))))..))))))))((((((((((((.....)))))))......)))))...))))). ( -51.90) >DroSim_CAF1 64165 105 - 1 UGCCCCGGUCCUUGGGGUAUGCUCAGCCCGGAUAAGCCGG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA (((((.((((....((((..(((((((((((.....))))--...).))))))..))))))))((((((((((((.....)))))))......)))))...))))). ( -51.90) >DroEre_CAF1 60416 97 - 1 UGACCCGCUCCUUGGGGUAUCCUUAGUCCGGAUAAGCCAC--CCUGUCUGAGCUGACCCGACCUGCCCCCAGGUGACCCUCACCUG--------GGCAACUGGGCAA ((.(((((...(((((......((((..((((((......--..))))))..)))))))))...)).((((((((.....))))))--------)).....))))). ( -37.80) >DroYak_CAF1 70298 97 - 1 UGACCGGUACCUUGGGGUAUACUUAGCCCGGAUAUGCCAG--CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUUACCUG--------GGCAACUGGGCAA ((.(((((......((((....(((((.((((((.(....--).)))))).)))))....))))((((..((((((...)))))))--------))).))))).)). ( -36.10) >DroAna_CAF1 68681 98 - 1 UGGGCCUGUCCCGGGGGUCUUUUUAGGUGGGCUAAGCUAGAGGUUGGAUAAAAUGACCAGA---GCUCACAGGUCACCCUUUC--GGCCAUUCAGGCCA----GCAA ..((((((..(((..((........(((((.((.((((...(((((.......)))))..)---)))...)).)))))))..)--)).....)))))).----.... ( -34.80) >consensus UGCCCCGGUCCUUGGGGUAUGCUCAGCCCGGAUAAGCCAG__CCUGUCUGAGCUGACCCGACCUGCCCUCAGGUGACCCUCACCUGGACAACUGGGCAACUGGGCAA ..............((((..((((((.(.((...........)).).))))))..))))....(((((.((((((.....))))))........(....).))))). (-22.00 = -23.28 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:24 2006