Locus 8357

Sequence ID 3L_DroMel_CAF1
Location 21,936,929 – 21,937,040
Length 111
Max. P 0.916446
window13672

overview

Window 2

Location 21,936,929 – 21,937,040
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 74.59
Mean single sequence MFE -23.88
Consensus MFE -11.95
Energy contribution -13.70
Covariance contribution 1.75
Combinations/Pair 1.23
Mean z-score -2.35
Structure conservation index 0.50
SVM decision value 1.11
SVM RNA-class probability 0.916446
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21936929 111 - 23771897
CUUAUUGUGGCCCUCGUUCAUUCGAUCGUUUUAUUACAAUCUUAUCACA--UAAAGUGAGUUUUAAGAGCAUGAGAGAAAGUGCCAUAAUGCCAACUUAAUG-------UUGAUUUUUCC
..(((((((((.((..(((........((......))..(((((((((.--....))))....)))))......)))..)).))))))))).((((.....)-------)))........ ( -23.10)
>DroSec_CAF1 58187 103 - 1
AGUAUUGUGGCAC--------UCGAUCGUAUUAUUACAAUCUAAUCACA--AAAAGUGAGAUUUAACAGAAUAGGAAGAAGUGCCAUAAUUCCAACUUAAUG-------UUGAUUUAUCC
.(.((((((((((--------((..((.((((.....((((...((((.--....))))))))......)))).)).).))))))))))).)((((.....)-------)))........ ( -25.90)
>DroSim_CAF1 62571 103 - 1
AGUAUUGUGGCAC--------UCGAUCGUAUUAUUACAAUCUAAUCACA--AAAAGUGAGAUUUAAUGGCAUAUGAGGAAGUGUCAUAAUGCCAACUUAAUG-------UUGAUUUAUCC
.((((((((((((--------(...(((((((((((.((((...((((.--....)))))))))))))..))))))...)))))))))))))((((.....)-------)))........ ( -30.60)
>DroYak_CAF1 68666 111 - 1
AUCAAUGUGGUAC--------UCGUUCGAUUUAUUCAAAUCUAACCACAUAAAAAGUUAGUCUAAACAACAUAAGAGGACUUACCAUGUUGCCAACUUAAUUUAAACCUUUGAUUUUU-U
..((((((((((.--------..(((.(((((....))))).))).............(((((.............)))))))))))))))...........................-. ( -15.92)
>consensus
AGUAUUGUGGCAC________UCGAUCGUAUUAUUACAAUCUAAUCACA__AAAAGUGAGAUUUAACAGCAUAAGAGGAAGUGCCAUAAUGCCAACUUAAUG_______UUGAUUUAUCC
.((((((((((((..........(((.(((....))).)))...((((.......)))).....................))))))))))))............................ (-11.95 = -13.70 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:23 2006