Locus 8356

Sequence ID 3L_DroMel_CAF1
Location 21,935,889 – 21,935,980
Length 91
Max. P 0.599358
window13671

overview

Window 1

Location 21,935,889 – 21,935,980
Length 91
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 83.79
Mean single sequence MFE -33.65
Consensus MFE -23.06
Energy contribution -24.29
Covariance contribution 1.22
Combinations/Pair 1.04
Mean z-score -2.19
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.599358
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21935889 91 - 23771897
------------AUGCA------UCUGUUUGUUUGCGUAGGUCUGUCUGUUGCACGGUGUUUGCUGAAGGCAGUACAUCAGCCGGAUGCAGACA-CGACCGAAGCAGCAU
------------.....------......((((.((...(((((((((((....((((...(((((....))))).....))))...)))))))-.))))...)))))). ( -33.40)
>DroSec_CAF1 57054 96 - 1
------------AUGCAUCUGCAUCUGUUUGUUUGCGUAGGUCUGUCUGUUGCA-GGUGUUUGCUGAAGGCAGUACAUCAGCCGGAUGCAGACA-CGACCGAAGCAGCAU
------------((((....)))).....((((.((...(((((((((((.((.-(((((((((.....)))).))))).)).....)))))))-.))))...)))))). ( -34.70)
>DroSim_CAF1 61443 96 - 1
------------AUGCAUCUGCAUCUGUUUGUUUGCGUAGGUCUGUCUGUUGCA-GGUGUUUGCUGAAGGCAGUACAUCAGCCGGAUGCAGACA-CGACCGAAGCAGCAU
------------((((....)))).....((((.((...(((((((((((.((.-(((((((((.....)))).))))).)).....)))))))-.))))...)))))). ( -34.70)
>DroEre_CAF1 57865 90 - 1
------------AUGCA------UCUGUUUGUUUGCAUAGGUCUGUCUGUGGCA-GGUGUUUGCUGAGGGCAGUACAUCAGCCGGAUGCAGACA-CGACCGAAGCAGCAU
------------.(((.------(((((......)))..((((((((((((((.-(((((((((.....)))).))))).)))....)))))))-.)))))).))).... ( -34.50)
>DroYak_CAF1 67643 90 - 1
------------AUGCA------UCUGUUUGCUUGCAUAGGUCUGUCUGUUGCA-GGUGUUUGCUGAAGGCAGUACAUCAGCCGGAUGCAGACA-CGACCCAAGCAGCAU
------------.....------..((((.(((((....(((((((((((.((.-(((((((((.....)))).))))).)).....)))))))-.))))))))))))). ( -33.50)
>DroPer_CAF1 51250 94 - 1
AGAACCGACUCUGUCUA------UCUGGUUGUUUGUCUAGGGCUGUCUGUUGUU-GGUGUUUGCUGAAGGCAGUACAUCAGCCGGAUGCAGACAACGAGCG---------
......(((...)))..------.((.(((((((((.(..(((((.((((..(.-.((....))..)..)))).....)))))..).))))))))).))..--------- ( -31.10)
>consensus
____________AUGCA______UCUGUUUGUUUGCGUAGGUCUGUCUGUUGCA_GGUGUUUGCUGAAGGCAGUACAUCAGCCGGAUGCAGACA_CGACCGAAGCAGCAU
.............................((((.((...(((((((((((.....(((((((((.....)))).)))))........)))))))..))))...)))))). (-23.06 = -24.29 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:22 2006