Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,926,864 – 21,926,959 |
Length | 95 |
Max. P | 0.591344 |
Location | 21,926,864 – 21,926,959 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 83.23 |
Mean single sequence MFE | -22.11 |
Consensus MFE | -15.10 |
Energy contribution | -16.49 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.20 |
Mean z-score | -1.93 |
Structure conservation index | 0.68 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21926864 95 + 23771897 GAU-----UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUAAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGC (((-----((((.(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))...))))))).. ( -24.59) >DroSec_CAF1 47811 95 + 1 GAU-----UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUGAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGC (((-----((((.(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))...))))))).. ( -24.29) >DroSim_CAF1 48133 95 + 1 GAU-----UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUGAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGU (((-----((((.(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))...))))))).. ( -24.29) >DroEre_CAF1 48579 93 + 1 GAU-----UGGUU-CAGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCCGCUGCAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGGA-AAUUAAUUGC (((-----((.((-((((((((((((.........(((((.....)))))....(((((......))))).....))))))))))))))-...))))).. ( -23.20) >DroYak_CAF1 55713 94 + 1 GAU-----GGGUU-CUGCUUACGGCUCGCUUAAAAGUUAUUAUUAAUAGCCCGCUGCAAAUAAAAUUGUAAAUCAAAUUGUAAGCUGAAAAAUUAAUUGC (((-----...((-(.((((((((((....(((......))).....))))...(((((......))))).........)))))).)))..)))...... ( -16.20) >DroAna_CAF1 55144 94 + 1 GAUUAAAUUGAACGAGGCGGACG---CAGUUGAAAAGUUUGAUUAAUAGCCAAUGGCAA---AAAGUUCAAAUCAAAUUGUUCGCUGCGAAAUUAAUUGC .....((((((.((.((((((((---...((((....(((((......(((...)))..---.....)))))))))..)))))))).))...)))))).. ( -20.12) >consensus GAU_____UGGUCGCGGCUUACGGCUCGCUUAAAAGUUGUUAUUAAUAGCCAGCUGAAAAUAAAAUUGUAAAUCAAGUUGUAAGCUGCAAAAUUAAUUGC .............(((((((((((((........((((.(((((..(((....)))..)))))))))........)))))))))))))............ (-15.10 = -16.49 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:21 2006