Locus 8354

Sequence ID 3L_DroMel_CAF1
Location 21,926,026 – 21,926,125
Length 99
Max. P 0.898618
window13669

overview

Window 9

Location 21,926,026 – 21,926,125
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 91.14
Mean single sequence MFE -24.05
Consensus MFE -23.40
Energy contribution -23.15
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -1.16
Structure conservation index 0.97
SVM decision value 1.00
SVM RNA-class probability 0.898618
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21926026 99 + 23771897
-GGGGGCGGUGCGGCUGCAAAAUAAAGAAAAGUGAGCAAGGAAAGUGAAAAGGUCGAGCGGAAUAUGGCAACUGUUUCACUGGCUUUUGCAGUUAUUGUG
-....((((.....)))).................((((...((.((.(((((((.((.((((((.(....))))))).))))))))).)).)).)))). ( -23.50)
>DroSec_CAF1 46957 99 + 1
-GGGGGCGGUGCGGCUGCAAAAUAAAGAAAAGUGAGCAAGGAAAGUGAAAAGGUCGAGCGGAAUAUGGCAACUGUUCCACUGGCUUUUGCAGUUAUUGUG
-....((((.....)))).................((((...((.((.(((((((.((.((((((.(....))))))).))))))))).)).)).)))). ( -26.40)
>DroSim_CAF1 47278 99 + 1
-GGGGGCGGAGCGGCUGCAAAAUAAAGAAAAGUGAGCAAGGAAAGUGAAAAGGUCGAGCGGAAUAUGGCAACUGUUCCACUGGCUUUUGCAGUUAUUGUG
-.(.(((......))).).................((((...((.((.(((((((.((.((((((.(....))))))).))))))))).)).)).)))). ( -25.60)
>DroEre_CAF1 47781 99 + 1
-CGGGGCAGUUCGGCUGCAAAAUAAGGAAAAGUGAGCAAGGAAAGUGAAAAGGUCGAGCAGAAUAUGGCAACUGUUCCACUGGCUUUUGCAGUUAUUGUG
-....(((((..(((((((((....((...((((.((..((....(....)..))..)).(((((.(....))))))))))..)))))))))))))))). ( -22.60)
>DroYak_CAF1 54912 95 + 1
-CAUGGCAGUUCGGCUGCAAAAA----AAAAGUGAGCAAGGAAAGUGAAAAGGUCGAGCAGAAUAUGGCAACUGUUCCACUGGCUUUUGCAGUUAUUGUG
-....(((((..((((((((((.----...((((.((..((....(....)..))..)).(((((.(....))))))))))...))))))))))))))). ( -23.80)
>DroAna_CAF1 54341 100 + 1
UGAGGGCGGGGCUGCUGCAAAGUAAAGAAAAGUGAGCGAGAAAAGUGAAAAGGUCGACUGGAAUAUGGCAACUGUUACAGUGGCUUUUGCAGUUAUUGUG
.....((((.....)))).................((((...((.((.(((((((.((((.((((.(....))))).))))))))))).)).)).)))). ( -22.40)
>consensus
_GGGGGCGGUGCGGCUGCAAAAUAAAGAAAAGUGAGCAAGGAAAGUGAAAAGGUCGAGCGGAAUAUGGCAACUGUUCCACUGGCUUUUGCAGUUAUUGUG
.....((((.....)))).................((((...((.((.(((((((.((.((((((.(....))))))).))))))))).)).)).)))). (-23.40 = -23.15 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:20 2006