| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,918,291 – 21,918,396 |
| Length | 105 |
| Max. P | 0.741071 |
| Location | 21,918,291 – 21,918,396 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.15 |
| Mean single sequence MFE | -24.40 |
| Consensus MFE | -15.48 |
| Energy contribution | -17.20 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21918291 105 + 23771897 AAAAUCCCGAUAAUGCUCUGACUAAUACGACUUAGGGCC----UGAUGGAAAUAAAUUAUUCUAUCAAAAAACGGAGAGCCUAUUGUCAGAGCUUAAAUCGAAGCUCGU ........(((((((((((..((((......))))....----((((((((........))))))))........)))))..)))))).((((((......)))))).. ( -27.60) >DroSec_CAF1 39148 105 + 1 AAAAUCCCGAUAAUGCUCUGACUAAUAAGACUUAGGGCC----UGAUGGAAAUAAAUUAUUCUAUCAAAAAACGGGGAGCCUAUUGUCAGAGCUUUAAUCGAAGCUCGU ....(((((.....(((((((..........))))))).----((((((((........)))))))).....)))))............(((((((....))))))).. ( -29.90) >DroSim_CAF1 39471 105 + 1 AAAAUCCCGAUAAUGCUCUGACUAAUAAGACUUAGGGCC----UGAUAGAAAUAAAUUAUUCUAUCACAAAACGGGGAGCCUAUUGUCAGAGCUUUAAUCGAAGCUCGU ....(((((.....(((((((..........))))))).----((((((((........)))))))).....)))))............(((((((....))))))).. ( -29.90) >DroEre_CAF1 40040 95 + 1 AAAAUCCAUAUAAUGCUCCGACUAAUAAGACCUAAGCCCUUUUUGAUGGAAAUAAAUUAUUGUCUCAAAAAC-GG-------------AGACCUUCAAUCGAAGCUCGU ...............(((((.((....))..........(((((((.(..((((...))))..)))))))))-))-------------))..((((....))))..... ( -12.60) >DroYak_CAF1 47309 105 + 1 GAAAUCCAGAUAAUGCUCUGACCAAUAAGACUUAAGCCC----UGAUGGAAAUAAAUUAUUCUAUCGAAAAUCUGAGAGCCGUUUGUUAGAGCUUUAAUCGAAGCUCGU ......(((((...(((((....................----.(((((((........)))))))(.....)..))))).)))))...(((((((....))))))).. ( -22.00) >consensus AAAAUCCCGAUAAUGCUCUGACUAAUAAGACUUAGGGCC____UGAUGGAAAUAAAUUAUUCUAUCAAAAAACGGAGAGCCUAUUGUCAGAGCUUUAAUCGAAGCUCGU ......(((.....(((((((..........))))))).....((((((((........)))))))).....)))..............(((((((....))))))).. (-15.48 = -17.20 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:16 2006