| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,907,992 – 21,908,107 |
| Length | 115 |
| Max. P | 0.500000 |
| Location | 21,907,992 – 21,908,107 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 87.94 |
| Mean single sequence MFE | -25.58 |
| Consensus MFE | -17.44 |
| Energy contribution | -18.96 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.08 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21907992 115 + 23771897 GGGCUGUGAUGGCCAAUAAACUACAAUUACUAUUUACAUUGCAAGGCAUUUAAUGCUAAUAUCAUAACUAAAUGAGGAAGAGGGCUAAUACCGUUUACCUUAACUC-AGUACUGGG .((((.....))))......................((.(((..(((((...)))))...............(((((.(((.((......)).))).)))))....-.))).)).. ( -20.70) >DroSec_CAF1 28777 115 + 1 GGGCUGUGAUGGCUCAUAAACCACAAUUACUAUUUACAUUGCAAGGCAAUUAAUGGUAAUAUUAUAACUAAACGAGGAAGAGGGCUAAUACCCUUUACUUCAACUC-AAUAAUGGG (((((.....))))).....(((..(((((((((...(((((...))))).))))))))).............((((.((((((......)))))).)))).....-.....))). ( -30.60) >DroSim_CAF1 29646 115 + 1 GGGCUGUGAUGGCCCAUAAACCACAAUUACUAUUUACAUUGCAAGGCAAUUAAUGGUAAUAUUAUAACUAAACGAGGAAGAGGGCUAAUACCCUUUACUUCAACUC-AAUAAUGGG (((((.....))))).....(((..(((((((((...(((((...))))).))))))))).............((((.((((((......)))))).)))).....-.....))). ( -33.60) >DroEre_CAF1 30145 113 + 1 GGACUGUGAAGGCACAUAAACCACAAUUAUUAUUUACAUUGCAGGGCAAUUAAUGGUAAUAUUAUAACUAAAUGAGGAACAGGGCCUA-ACCUUUUACUUCAACAAAAAUAAUG-- ((..((((....))))....))...(((((((((...(((((...))))).)))))))))............(((((((.(((.....-.))).)).)))))............-- ( -18.50) >DroYak_CAF1 36490 113 + 1 GGACUGUGAUGGCACAUAAAGUACAAUUACUAUUUACAUUGCAG-UCAAUUAAUGGUAAUAUUAUAACUAAAUGAGGAAGAGGACUUA-ACCUUUUACUUCAACUU-AAUAAUGGG .(((((..(((........((((....)))).....)))..)))-)).(((((((((.........))))..(((((((((((.....-.)))))).)))))..))-)))...... ( -24.52) >consensus GGGCUGUGAUGGCACAUAAACCACAAUUACUAUUUACAUUGCAAGGCAAUUAAUGGUAAUAUUAUAACUAAAUGAGGAAGAGGGCUAAUACCCUUUACUUCAACUC_AAUAAUGGG (((((.....)))))..........(((((((((...(((((...))))).))))))))).............((((.((((((......)))))).))))............... (-17.44 = -18.96 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:15 2006