Locus 8349

Sequence ID 3L_DroMel_CAF1
Location 21,897,150 – 21,897,261
Length 111
Max. P 0.520672
window13661

overview

Window 1

Location 21,897,150 – 21,897,261
Length 111
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 84.51
Mean single sequence MFE -20.31
Consensus MFE -13.00
Energy contribution -12.80
Covariance contribution -0.20
Combinations/Pair 1.15
Mean z-score -1.80
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.520672
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21897150 111 + 23771897
UCACGUACAUACAAAGUUCAGUAUAUC--AGCGCCUAACAAUUAAGCUGAAAAUGUCACUAGAUUUAAAAACCACAAGUGACUGCAGCCCCUCUAAUGGCACCACCCACCCAC
....(((.((((........)))).((--(((.............)))))....((((((................))))))))).(((........)))............. ( -17.11)
>DroSec_CAF1 17877 102 + 1
UCA-----------AGUUUAGUAUAUCACAGCGCCUAACAAUUAAGCUGAAAAUGUCACUAGAUUUAAAAACCACAAGUGAGUGUAGCCCCUCAAAUGGCGCCACCCACCCAC
..(-----------((((((((((((..((((.............))))...)))).)))))))))...........(((.(((..(((........)))..))).))).... ( -22.92)
>DroSim_CAF1 18546 102 + 1
UCA-----------AGUUUAGUAUAUCACAGCGCCUAACAAUUAAGCUGAAAAUGUCACUAGAUUUAAAAACCACAAGUGACUGUAGCCCCUCAAAUGGCGCCACCCACUCAC
..(-----------((((((((((((..((((.............))))...)))).)))))))))..........((((..((..(((........)))..))..))))... ( -20.52)
>DroEre_CAF1 17949 103 + 1
UUGCGCACAUUCA-AGUUCAGUAUAUC--AGCGCUUAACAAUUAAGCUGAAAAUGUCACUAGAUUUAAGAACCACAAGUGACGGUAGCCCCUCAAAUGGCACCACC-------
.(((..((.....-.))...)))..((--(((.............)))))....((((((................))))))(((.(((........))))))...------- ( -20.11)
>DroYak_CAF1 21486 106 + 1
UUACGCACAUACA-AGUUCAGUAUAUC--AGCGCUUAACAAUUAAGCUGAAAAUGUCACUAGAUUUAAAAACCACAAGUGACGGUAGCCCCUCAAAUGGCACCACCC----GC
....((..((((.-......)))).((--(((.............)))))....((((((................))))))(((.(((........))))))....----)) ( -20.91)
>consensus
UCACG_ACAU_CA_AGUUCAGUAUAUC__AGCGCCUAACAAUUAAGCUGAAAAUGUCACUAGAUUUAAAAACCACAAGUGACUGUAGCCCCUCAAAUGGCACCACCCAC_CAC
................................(((..........((((.....((((((................))))))..)))).........)))............. (-13.00 = -12.80 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:12 2006