Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,895,699 – 21,895,838 |
Length | 139 |
Max. P | 0.953135 |
Location | 21,895,699 – 21,895,798 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 87.58 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -19.17 |
Energy contribution | -19.50 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.77 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21895699 99 - 23771897 ACUACAAACAUUGAAUUGUUUGUAAAGUAUGUUUGAUCAGUUAAAUGAUCGGAACAUUUACGCAGUU------------CGUCAUGAACAGAUUACACUGGUGUCAUUAUU ............(((((((..(((((.....((((((((......))))))))...)))))))))))------------)...((((.(((......)))...)))).... ( -22.20) >DroSec_CAF1 16385 108 - 1 ACUACAAACAUUGAAUUGUUUGUAAAGUGUGUUUGAUCAGUUAAAUGAUCGUUACAUUUACACAGUUUGAAGUGCUUCUCGCCAUGAACAGAUUACACUGGUGUCA---UU ..((((((((......))))))))(((((((..((((((......)))))).)))))))(((((((.(((..((.(((.......)))))..))).))).))))..---.. ( -26.20) >DroSim_CAF1 16557 108 - 1 ACUACAAACAUUGAAUUGUUUGUAAAGUGUGUUUGAUCAGUUAAAUGAUCGUUACAUUUACACAGUUUAAAGUGCUUCUCGCCAUGAACAGAUUACACUGGUGUCA---UU ..((((((((......))))))))(((((((..((((((......)))))).)))))))(((((((.(((..((.(((.......)))))..))).))).))))..---.. ( -26.10) >consensus ACUACAAACAUUGAAUUGUUUGUAAAGUGUGUUUGAUCAGUUAAAUGAUCGUUACAUUUACACAGUUU_AAGUGCUUCUCGCCAUGAACAGAUUACACUGGUGUCA___UU ..((((((((......))))))))((((((...((((((......))))))..)))))).........................(((.(((......)))...)))..... (-19.17 = -19.50 + 0.33)
Location | 21,895,731 – 21,895,838 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.36 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -17.09 |
Energy contribution | -18.78 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.18 |
Mean z-score | -2.26 |
Structure conservation index | 0.59 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21895731 107 - 23771897 UGCGGGCUACAACCGAGGCAAAGGUGGGCUACUCGAGUUGACUACAAACAUUGAAUUGUUUGUAAAGUAUGUUUGAUCAGUUAAAUGAUCGGAACAUUUACGCAGUU---- ((((.(((.((((((((((........))..)))).))))..((((((((......)))))))).)))(((((((((((......))))).))))))...))))...---- ( -32.60) >DroSec_CAF1 16422 111 - 1 AGCGGGCUACAACCGAGACAAUGGUGGGCUACUCGAGUUCACUACAAACAUUGAAUUGUUUGUAAAGUGUGUUUGAUCAGUUAAAUGAUCGUUACAUUUACACAGUUUGAA ..(((.......)))((((..(((((((((.....)))))))((((((((......))))))))(((((((..((((((......)))))).))))))).))..))))... ( -31.30) >DroSim_CAF1 16594 111 - 1 AGCGGGCUACAACCGAGACAAUGGUGGGCUACUCGAGUUCACUACAAACAUUGAAUUGUUUGUAAAGUGUGUUUGAUCAGUUAAAUGAUCGUUACAUUUACACAGUUUAAA ..(((.......)))((((..(((((((((.....)))))))((((((((......))))))))(((((((..((((((......)))))).))))))).))..))))... ( -31.30) >DroEre_CAF1 14607 88 - 1 AGCGAUCUACACCCGGGACAAGGGUGGGCUACUCGAGUUUUCUACA-ACAUGGAAUUGU-------------UUGAUCAGUUCAAUGAUCAUUACA---------UUUUAA ...((((..(((((.......)))))((((..(((((..(((((..-...)))))...)-------------))))..))))....))))......---------...... ( -19.70) >DroYak_CAF1 20052 110 - 1 AGUCAACUACACAAGAGACACAGGUGGGCUACUCGAGCUUACUACA-ACAUUGAAUUGUUUGUGAAGUAUGUUUGAUCAGUUCAAUGAUCAUUACAUGCACGACCUUUUAA .(((..............((((((((((((.....))))))))..(-(((......))))))))..((((((.((((((......))))))..))))))..)))....... ( -30.50) >consensus AGCGGGCUACAACCGAGACAAAGGUGGGCUACUCGAGUUCACUACAAACAUUGAAUUGUUUGUAAAGUAUGUUUGAUCAGUUAAAUGAUCGUUACAUUUACACAGUUUUAA ..(((.......)))(((((..((((((((.....))))))))(((((((......)))))))......)))))(((((......)))))..................... (-17.09 = -18.78 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:11 2006