Locus 8347

Sequence ID 3L_DroMel_CAF1
Location 21,890,442 – 21,890,562
Length 120
Max. P 0.512097
window13658

overview

Window 8

Location 21,890,442 – 21,890,562
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.11
Mean single sequence MFE -37.15
Consensus MFE -23.92
Energy contribution -22.90
Covariance contribution -1.02
Combinations/Pair 1.59
Mean z-score -1.27
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.512097
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21890442 120 + 23771897
GUGAUCCGUUCGCUGUCGAGCAACUACUCCAUGUUCCUGGUGUUCGAGUUCCUGGACAUGGCCGUGGGUAGCACCCUCUUCCCCACCGCCUUUCUGUUGGCAAUCGAGCUGGUUGGCCCG
((((.....))))((((.((.((((((.(((......))).))...)))).)).)))).(((((((((.((......))..))))).(((........))).............)))).. ( -35.40)
>DroVir_CAF1 12985 120 + 1
AUUAUACGUUCGGUGUCCAGCAAUUAUUAUAUGUUCCUGUGCUUCGAGUUUCUCGACAUGGUUGUGGGCAGCACUCUGUUUCCCACGGCCUUCCUGCUGGCCAUUGAGCUGGUGGGUCCC
.......((((((((.((((((................(((..(((((...))))))))(((((((((.(((.....))).)))))))))....)))))).))))))))........... ( -43.00)
>DroPse_CAF1 10077 120 + 1
GUAAUUCGCUCCCUGUCGACCAACUAUUACAUGUUCCUGAUCUUCGAGUUCCUCGAUAUGGCCGUGGGCAGCACUCUUUUUCCCACGGCCUUCCUUUUGGCCAUUGAGUUGGUAGGCCCC
..............(((.(((((((.....(((..((......(((((...)))))...(((((((((.((........)))))))))))........)).)))..))))))).)))... ( -35.60)
>DroGri_CAF1 14007 120 + 1
AUCAUCCGUUCCCUGUCCAGCAAUUACGCGAUGUUUGUGUGCUUCGAAUUUCUGGAUAUGGCUGUGGGCAGCACUCUGUUCCCCACGGCCUUUUUGCUGGCCAUCGAGCUGGUUGGACCC
.(((.((((((..((.(((((((.(((((((...)))))))..................(((((((((.(((.....))).)))))))))...))))))).))..)))).)).))).... ( -44.30)
>DroWil_CAF1 12446 120 + 1
GUCAUACGAUCCCUUUCGACCAAUUAUUACAUGUUCCUGUCCUUUGAAUUUCUUGACAUGGCCGUGGGUAGCACUUUAUUUCCAACCGCUUUUUUGUUGGCCAUUGAGCUGGUGGGUCCG
.......((......))((((........((((..(.((((....(.....)..)))).)..))))(.((((.(...((..(((((.........)))))..)).).)))).).)))).. ( -21.40)
>DroMoj_CAF1 12586 120 + 1
AUCAUACGUUCUUUGUCUACGAACUAUUCCAUGUUUCUGUGCUUCGAGUUCCUGGACAUGGCUGUGGGCAGCACGCUGUUUCCCACAGCCUUUUUGCUGGCCAUCGAACUGGUCGGACCG
.............((((((.(((((....(((......))).....))))).)))))).(((((((((.(((.....))).)))))))))......(((((((......))))))).... ( -43.20)
>consensus
AUCAUACGUUCCCUGUCGACCAACUAUUACAUGUUCCUGUGCUUCGAGUUCCUGGACAUGGCCGUGGGCAGCACUCUGUUUCCCACGGCCUUUCUGCUGGCCAUCGAGCUGGUGGGACCC
.............((((((..((((.....................))))..)))))).((((((((((((....)))...)))))))))..((..(..((......))..)..)).... (-23.92 = -22.90 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:09 2006