Locus 8346

Sequence ID 3L_DroMel_CAF1
Location 21,882,672 – 21,882,770
Length 98
Max. P 0.509835
window13657

overview

Window 7

Location 21,882,672 – 21,882,770
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.16
Mean single sequence MFE -29.91
Consensus MFE -20.90
Energy contribution -21.49
Covariance contribution 0.59
Combinations/Pair 1.31
Mean z-score -1.36
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.509835
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21882672 98 + 23771897
UAUUUCUUUACUUGCAGUCUUGCGGGUUUACGCCAAAGCAUUGGGAGAGCCUCUUGCGGAAAAUACUAAGCAAGCAGGAGGCGCUGCCCAAUUGGAAG
..........(((.((((..(((.(((....)))...))).((((((.(((((((((................))))))))).)).)))))))).))) ( -34.09)
>DroVir_CAF1 4937 97 + 1
C-UGUUUCUGCUUACAGUCCUGUGGAUUUACGCCCAAGCAUUGGGAGUCUUUGCUGCGCAAGAUACUUAGCAAGCAGGAAGCGCUGCCCAAUUGGAAG
.-...(((((((((((....)))((........))))))(((((((((.(((.(((((((((...))).))..)))).))).))).)))))).)))). ( -25.30)
>DroGri_CAF1 6091 93 + 1
-----UUAUGCCUCCAGUCCUGUGGGUUUACACCCAAACAUUGGGAAUCGCUGCUGCGCAAGAUAUUAAGCAAACAGGAUGCGCUGCCUAAUUGGAAG
-----.......(((((((((((..(((((..((((.....))))...(((....)))........)))))..)))))))((...)).....)))).. ( -25.20)
>DroSec_CAF1 4984 98 + 1
UAUUUCUUUACUUGCAGUCCUGCGGGUUUACGCCAAAGCAUUGGGAGAGUCUCUUGCGGAAAAUACUAAGCAAGCAGGAGGCGCUGCCCAAUUGGAAG
.........(((((((....))))))).....(((....((((((((.(((((((((................))))))))).)).)))))))))... ( -32.59)
>DroSim_CAF1 5101 98 + 1
UAUUUCUUUACUUGCAGUCCUGCGGGUUUACGCCAAAGCAUUGGGAGAGUCUCUUGCGGAAAAUACUAAGCAAGCAGGAGGCGCUGCCCAAUUGGAAG
.........(((((((....))))))).....(((....((((((((.(((((((((................))))))))).)).)))))))))... ( -32.59)
>DroAna_CAF1 4406 98 + 1
AGUGUUUUUGAUUGCAGUCAUGUGGAUUUACACCAAAACACUGGGAGAGCCUGUUGCGAAAGAUUCUCAGUAAGCAGGAGGCGCUGCCCAAUUGGAAG
((((((((((((....)))).(((......))).))))))))(((((.((((.((((................)))).)))).)).)))......... ( -29.69)
>consensus
UAUUUCUUUACUUGCAGUCCUGCGGGUUUACGCCAAAGCAUUGGGAGAGUCUCUUGCGGAAAAUACUAAGCAAGCAGGAGGCGCUGCCCAAUUGGAAG
.........(((((((....))))))).....(((....((((((((.((((.((((................)))).)))).)).)))))))))... (-20.90 = -21.49 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:08 2006