| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,882,411 – 21,882,531 |
| Length | 120 |
| Max. P | 0.537221 |
| Location | 21,882,411 – 21,882,531 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -31.12 |
| Consensus MFE | -15.13 |
| Energy contribution | -15.00 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21882411 120 - 23771897 CACAAAAAGGCGGGACAGAAACUAAGCAGGUAGUUUAUGGCCAAGUUCUUGGGCAACACGAUCACCAGAAAACUGUCAAUGCCGAUUAAAUUGGGCGUCUUCUGUAUGAAGGCGAGAAAC ........((((.(((((((((((......)))))).((.((((....)))).)).................)))))..))))............(((((((.....)))))))...... ( -32.40) >DroVir_CAF1 4756 120 - 1 CACAGGAAGGCAGGACAAAAACUCAACAUAUAAUUGAUAGCCAAAUUUUUAGGCAAUAUUAUGACCAAGAAGCUAUCUAUGCCCAUUAAGUGGGGCGAUUUCUGUAUGAAAGCCAAAAAC ........(((((........))...((((((...((((((....(((((.((((......)).)))))))))))))..(((((........))))).....))))))...)))...... ( -26.10) >DroGri_CAF1 5913 120 - 1 CACAAGAAUGCUGGGCAAAAGCUCAGCAUAUAGUUGAUGGCCAAAUUCUUGGGUAAUAUGAUGACCAAGAAACUAUCAACGCCUAUCAAGUGCGGUGAUUUCGGUAUGAAAGCCAAAAAC (((....(((((((((....)))))))))...((((((((.....(((((((............))))))).))))))))((((....)).)).))).....(((......)))...... ( -37.50) >DroWil_CAF1 4346 120 - 1 CAUAGAUAGGCUGGACAAAAGCUCAUCAUAUAGUUAAUGGCCAAAUUUUUGGGUAAAAUGAUAACCAGGAAACUAUCAAUGCCCAUUAGAUUUGGUGUCUUUUGUAUGAAUGCCAGGAAU ........(((((..(....)..))((((((((......(((((((((.((((((...((((....((....)))))).))))))..))))))))).....))))))))..)))...... ( -32.60) >DroMoj_CAF1 4263 120 - 1 CACAAGUAGGCGGGACAGAAGCUCAGCAUAUAAUUGAUAGCCAGAUUCUUCGGCAAUAUUAUAACCAAGAAGCUAUCGAUGCCUAUCAGAUUCGGCGAUUUCUGUAUGAAUGCCAAGAAC ........((((..(((((((.((........(((((((((....(((((.((...........))))))))))))))))(((..........)))))))))))).....))))...... ( -31.00) >DroAna_CAF1 4220 120 - 1 CAGAGAUAAGUGGGACAGAAACCCAGUAGAUAGUUGAUGGCCAAGUUCUUGGGCAAUACGAUUACCAGGAAACUGUCAAUACCCAUCAGAUGCGGCGACUUUUGUAUGAAUGCCAGAAAC ..........((((.......))))(((.....(((((((((((....))))........(((..(((....)))..)))..))))))).)))((((((....)).....))))...... ( -27.10) >consensus CACAAAAAGGCGGGACAAAAACUCAGCAUAUAGUUGAUGGCCAAAUUCUUGGGCAAUAUGAUAACCAAGAAACUAUCAAUGCCCAUCAAAUGCGGCGACUUCUGUAUGAAUGCCAAAAAC .........((...(((((((...........((((((((.....(((((((............))))))).))))))))(((..........)))..)))))))......))....... (-15.13 = -15.00 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:07 2006