Locus 8344

Sequence ID	3L_DroMel_CAF1
Location	21,877,978 – 21,878,095
Length	117
Max. P	0.511919

overview

Window 5

Location	21,877,978 – 21,878,095
Length	117
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	81.52
Mean single sequence MFE	-36.18
Consensus MFE	-22.38
Energy contribution	-22.30
Covariance contribution	-0.08
Combinations/Pair	1.42
Mean z-score	-1.63
Structure conservation index	0.62
SVM decision value	-0.04
SVM RNA-class probability	0.511919
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21877978 117 + 23771897
AAAAGGAACAGGCGGGCAGUCCGGUGCACUCCU---CCUCCACCAUUAGCUGCACAUCAAGCAGCAACAGCAAUACAGUCUGCUCUGAGGACGACACGAAGAUGUUCGUACGCAUCUACG
........(((((((((.....((((.......---....))))....(((((.......)))))............)))))).))).........((.((((((......)))))).)) ( -32.40)
>DroVir_CAF1 861 120 + 1
AAAAGGAGCAGGCCGGCAGUCCGGUGCACUCGAAUAGCACCAGCAUAAGCUGCACAUCGAGCAGCAAUAGCAACACAGUUUGCUCCGAGGAUGAUACAAAGAUGUUUGUGCGUAUCUAUG
....(((((((((.(.......(((((.........))))).((....(((((.......)))))....))....).)))))))))..(((((.((((((....))))))..)))))... ( -39.00)
>DroGri_CAF1 1553 120 + 1
AGAAGGAGCAGGCUGGGAGCCCGGUGCACUCGAAUAGCACCAGCAUUAGCUGCACAUCGAGCAGCAACAGCAACACCGUUUGCACCGAAGAUGAGACGAAGAUGUUCGUGCGCAUCUAUG
....((.((((((.((..((..(((((.........))))).))....(((((.......)))))..........)))))))).))..(((((.((((((....))))).).)))))... ( -40.60)
>DroWil_CAF1 430 117 + 1
AAAAGGAACAGGCUGGAAGUCCAGUGCAUUCAU---CAUCGACAAUUAGCUGCACUUCAAGCAGCAAUAGCAAUACAGUUUGCUCCGAGGAUGACACUAAAAUGUUUGUACGAAUCUAUG
...(.(((((.(((((....)))))....((((---(.(((.......(((((.......)))))...(((((......))))).))).)))))........))))).)........... ( -31.70)
>DroMoj_CAF1 427 120 + 1
AGAAGGAGCAAGCUGGCAGUCCGGUGCACUCAAAUAGCACCAGCAUAAGCUGCACAUCGAGCAGCAAUAGCAACACGGUUUGCUCUGAGGACGAUACGAAAAUGUUUGUGCGCAUCUAUG
....(((((((((((.......(((((.........))))).((....(((((.......)))))....))....)))))))))))((.(.((.((((((....))))))))).)).... ( -39.70)
>DroAna_CAF1 377 117 + 1
AGAAGGAACAGGCGGGCAGCCCCGUCCAUUCAU---CUUCCACCAUUAGUUGCACCUCGAGCAGCAACACCAAUACUGUAUGCUCCGAGGAUGACACCAAGAUGUUCGUGCGCAUCUACG
.(((((((..((((((....))))))..)))..---))))........(.(((((((((((((...(((.......))).)))).))))).)).)).).((((((......))))))... ( -33.70)
>consensus
AAAAGGAACAGGCUGGCAGUCCGGUGCACUCAA___CCACCACCAUUAGCUGCACAUCGAGCAGCAACAGCAACACAGUUUGCUCCGAGGAUGACACGAAGAUGUUCGUGCGCAUCUAUG
....(((.((((((((....))))).......................(((((.......)))))..............))).)))..(((((..(((((....)))))...)))))... (-22.38 = -22.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:06 2006