Locus 8343

Sequence ID 3L_DroMel_CAF1
Location 21,877,286 – 21,877,376
Length 90
Max. P 0.640208
window13654

overview

Window 4

Location 21,877,286 – 21,877,376
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 86.72
Mean single sequence MFE -14.14
Consensus MFE -11.55
Energy contribution -11.36
Covariance contribution -0.19
Combinations/Pair 1.19
Mean z-score -1.92
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.640208
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21877286 90 + 23771897
AUCCACUCUUCCGAUCCCUAACCCCAGUAUAAG---CGC-ACAAUUAUGCUAAUGGUUCACAUGCCCAAAUAAGAACCACUUGAGCCCCGCUAA
.....(((.................(((((((.---...-....)))))))..((((((..((......))..))))))...)))......... ( -13.20)
>DroSec_CAF1 4221 90 + 1
AUCCACUCUUCCGAUCCCUGACCCCAGCAUAAG---CGC-ACAAUUAUGCUAAUGGUUCACAUGCCCAAACAAGAACCACUUGAGCCCCGCUAA
.....(((.................(((((((.---...-....)))))))..((((((..............))))))...)))......... ( -14.74)
>DroSim_CAF1 4208 90 + 1
AUCCACUCUUCCGAUCCCUGACCCCAGCAUAAG---CGC-ACAAUUAUGCUAAUGGUUCACAUGCCCAAACAAGAACCACUUGAGCCCCGCUAA
.....(((.................(((((((.---...-....)))))))..((((((..............))))))...)))......... ( -14.74)
>DroEre_CAF1 4746 90 + 1
AUCCACUCUUCCGAUCCCUGACCCCAGCAUAAG---CGC-ACAAUUAUGCUAAUGGUUCACAUGACCAAACAAGAACCACUUGAGCCCCGCUAA
.....(((.................(((((((.---...-....)))))))..((((((..............))))))...)))......... ( -14.74)
>DroWil_CAF1 3317 88 + 1
UCCCAUUUUCUCUUCCUCUUUCUCUAGCAUAAAAGGCACAACAAUUAUGCUAAUGGUUGACAUGCCCAUACAACAACCACUUGA------CUGA
................((..((..((((((((..(......)..)))))))).((((((...((......)).))))))...))------..)) ( -13.00)
>DroYak_CAF1 4398 90 + 1
AACCACUCUUCCAAUCCCUGACCCCAGCAUAAG---CGC-ACAAUUAUGCUAAUGGUUCACAUGCCCAAACAAGAACCACUUUAGCCCCGCUAA
.........................(((((((.---...-....)))))))..((((((..............))))))..(((((...))))) ( -14.44)
>consensus
AUCCACUCUUCCGAUCCCUGACCCCAGCAUAAG___CGC_ACAAUUAUGCUAAUGGUUCACAUGCCCAAACAAGAACCACUUGAGCCCCGCUAA
.....(((.................(((((((............)))))))..((((((..............))))))...)))......... (-11.55 = -11.36 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:05 2006