| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,854,723 – 21,854,833 |
| Length | 110 |
| Max. P | 0.569719 |
| Location | 21,854,723 – 21,854,833 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -39.95 |
| Consensus MFE | -28.71 |
| Energy contribution | -28.22 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21854723 110 + 23771897 UU---GU-CCCGCU----C--UGUGAACAGGUGGCCAAGAACCCGCUGGCCAGUCUGGCCGCCUUGGGCCUGGCUGGGAUGAAUCCGGCCAGCACUGGGGGCAUCAACCACACAGGUGAG .(---((-((((((----(--.(((..((((((((((.(....)..)))))).))))..)))...))))(((((((((.....))))))))).....))))))(((.((.....))))). ( -49.70) >DroVir_CAF1 34941 110 + 1 UC---GA-GUUGCC----U--UUCCAACAGGUUGCCAAGAAUCCAUUAGCCAGUUUGGCUGCCUUGGGCCUGGCCGGCAUGACGCCAGCUAGCACUGGCGGUAUAAAUCACACAGGUAAG ..---..-.(((((----(--......(((((..(((((.......(((((.....))))).))))))))))((((((.....))).((((....)))))))...........)))))). ( -34.90) >DroPse_CAF1 74596 113 + 1 UCUCCUC-CCCGUU----U--CGAAAACAGGUGGCCAAGAACCCGUUGGCCAGUCUGGCUGCCCUGGGCCUGGCUGGCAUGAACCCAGCCAGCACUGGGGGCAUCAACCACACAGGUGAG ....(((-.((...----.--......(((((((((((.......))))))).))))(.((((((.((.((((((((.......))))))))..)).)))))).).........)).))) ( -47.70) >DroGri_CAF1 92737 115 + 1 UC---AAUGUUGCUCAAUG--UUUCAACAGGUUUCUAAGAAUCCAUUGGCCAGUUUGGCCGCCUUGGGCCUUGCCGGCAUGACGCCAGCCAGCACUGGUGGCAUAAAUCACACAGGUAAG ..---......((((((.(--(.......((.(((...))).))...((((.....)))))).))))))(((((((((.....))).((((.(...).))))............)))))) ( -35.20) >DroWil_CAF1 22210 105 + 1 -----------CAU----GGGCGCACAUAGGUUGCCAAGAAUCCUUUGGCCAGUUUGGCUGCUUUGGGUCUAGCUGGAAUGAAUCCCGCCAGCACUGGUGGCAUCAAUCACACAGGUAAG -----------...----.((((.((....))))))......(((.((.((((((.((((......)))).))))))..(((...((((((....))))))..)))....)).))).... ( -31.10) >DroMoj_CAF1 90981 110 + 1 UC---GG-GUUGCC----U--UCCCAACAGGUUGCCAAGAAUCCUUUGGCCAGUUUGGCUGCCUUGGGCCUGGCCGGCAUGACGCCCGCCAGCACCGGUGGCAUAAAUCACACAGGUAAG ..---.(-((.(((----(--.......)))).)))......(((.(((((.....)))((((((((..(((((.(((.....))).)))))..)))).)))).......)).))).... ( -41.10) >consensus UC___GA_GUUGCU____U__UGCCAACAGGUUGCCAAGAAUCCAUUGGCCAGUUUGGCUGCCUUGGGCCUGGCCGGCAUGAAGCCAGCCAGCACUGGUGGCAUAAAUCACACAGGUAAG ...............................(((((...........((((.....))))(((((((..(((((.(((.....))).)))))..)))).)))............))))). (-28.71 = -28.22 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:04 2006