Locus 8341

Sequence ID 3L_DroMel_CAF1
Location 21,853,185 – 21,853,286
Length 101
Max. P 0.998178
window13652

overview

Window 2

Location 21,853,185 – 21,853,286
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 89.50
Mean single sequence MFE -18.46
Consensus MFE -18.02
Energy contribution -17.46
Covariance contribution -0.56
Combinations/Pair 1.17
Mean z-score -2.77
Structure conservation index 0.98
SVM decision value 3.03
SVM RNA-class probability 0.998178
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21853185 101 - 23771897
AAAACUGUCAUACAAACUUGCGUGUGUUGGCAUAUUAACAAACACUUCUUGCCAAGCACAGACAGUACAUAUAAAAACGCUAACACACAGAUACAGAUACA
....((((((........)).((((((((((............(((((((((...))).))).)))............))))))))))....))))..... ( -20.15)
>DroSim_CAF1 32743 94 - 1
-AAACUGUCAUACAAACUUGCGUGUGUUGGCAUAUUAACAAACACUUCUUGCCAAGCACAGACAGUACAUAUAAGAACGCUAACACACAGA------UACA
-....................((((((((((............(((((((((...))).))).)))............))))))))))...------.... ( -18.85)
>DroEre_CAF1 33449 90 - 1
-AAACUGUCAUACAAACUUGCGUGUGUUGGCAUAUUAACAAACACUUCUUGCCAAGCACAGACAGUACACAUAAAAACGCUAAUACACAAA----------
-..((((((...((....)).((((.((((((.................)))))))))).)))))).........................---------- ( -17.93)
>DroYak_CAF1 32523 90 - 1
-AAAUUGUCAUACAAACUUGCGUGUGCUGGCAUAUUAACAAACACUUCUUGCCAAGCACAGACGGUACAUAUAAAAACGCUAACAUACAGA----------
-..((((((...((....))..((((((((((.................)))).)))))))))))).........................---------- ( -16.93)
>consensus
_AAACUGUCAUACAAACUUGCGUGUGUUGGCAUAUUAACAAACACUUCUUGCCAAGCACAGACAGUACAUAUAAAAACGCUAACACACAGA__________
...((((((...((....))..((((((((((.................)))).))))))))))))................................... (-18.02 = -17.46 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:03 2006