Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,532,511 – 2,532,610 |
Length | 99 |
Max. P | 0.864428 |
Location | 2,532,511 – 2,532,610 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.79 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -18.42 |
Energy contribution | -18.68 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.68 |
Structure conservation index | 0.92 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2532511 99 + 23771897 GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACUAAAGGACGCAUGCACUGAGAAA-AAAUGGCAUUAAGAAGAU ........((((..((.....))(((((..(((((((((........))))).....(....)...))))...)))))...-...))))........... ( -18.30) >DroSec_CAF1 155374 99 + 1 GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACCAAAGGACGCAUGCAGUGAGAAA-AAAUGGCAUUUAUAAAAU .((((((.((((((((......)))).....((((.((.(((......)))......((...))..)).))))........-...)))).)))))).... ( -21.00) >DroSim_CAF1 152934 99 + 1 GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACCAAAGGACGCAUACACUGAGGAA-AAAUGGUGUUUAUGAAAU .((((((.((((..(......)((((((..(((((((((........))))).....((...))..))))...))))))..-...)))).)))))).... ( -20.90) >DroYak_CAF1 155574 100 + 1 GAAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAGGCUGGCGAAAAAGCUUAGACACCACAGGACGCAUGCACUGAGAAAAAAAUGGUAUUUAUGACAU ..(((((.((((..((.....))(((((..(((((((((........))))).....((...))..))))...))))).......)))).)))))..... ( -20.10) >consensus GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACCAAAGGACGCAUGCACUGAGAAA_AAAUGGCAUUUAUAAAAU .((((((.((((..((.....))(((((..(((((((((........))))).....((...))..))))...))))).......)))).)))))).... (-18.42 = -18.68 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:20 2006