Locus 834

Sequence ID 3L_DroMel_CAF1
Location 2,532,511 – 2,532,610
Length 99
Max. P 0.864428
window1283

overview

Window 3

Location 2,532,511 – 2,532,610
Length 99
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 91.79
Mean single sequence MFE -20.07
Consensus MFE -18.42
Energy contribution -18.68
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.92
SVM decision value 0.84
SVM RNA-class probability 0.864428
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2532511 99 + 23771897
GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACUAAAGGACGCAUGCACUGAGAAA-AAAUGGCAUUAAGAAGAU
........((((..((.....))(((((..(((((((((........))))).....(....)...))))...)))))...-...))))........... ( -18.30)
>DroSec_CAF1 155374 99 + 1
GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACCAAAGGACGCAUGCAGUGAGAAA-AAAUGGCAUUUAUAAAAU
.((((((.((((((((......)))).....((((.((.(((......)))......((...))..)).))))........-...)))).)))))).... ( -21.00)
>DroSim_CAF1 152934 99 + 1
GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACCAAAGGACGCAUACACUGAGGAA-AAAUGGUGUUUAUGAAAU
.((((((.((((..(......)((((((..(((((((((........))))).....((...))..))))...))))))..-...)))).)))))).... ( -20.90)
>DroYak_CAF1 155574 100 + 1
GAAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAGGCUGGCGAAAAAGCUUAGACACCACAGGACGCAUGCACUGAGAAAAAAAUGGUAUUUAUGACAU
..(((((.((((..((.....))(((((..(((((((((........))))).....((...))..))))...))))).......)))).)))))..... ( -20.10)
>consensus
GUAUGGAAGCCAAAGGAACAACCCUUAGAAAUGCAAGCUAGCGAAAAAGCUUAGACACCAAAGGACGCAUGCACUGAGAAA_AAAUGGCAUUUAUAAAAU
.((((((.((((..((.....))(((((..(((((((((........))))).....((...))..))))...))))).......)))).)))))).... (-18.42 = -18.68 +   0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:20 2006