Locus 8339

Sequence ID 3L_DroMel_CAF1
Location 21,841,480 – 21,841,572
Length 92
Max. P 0.546147
window13649

overview

Window 9

Location 21,841,480 – 21,841,572
Length 92
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.62
Mean single sequence MFE -15.72
Consensus MFE -10.01
Energy contribution -9.40
Covariance contribution -0.61
Combinations/Pair 1.42
Mean z-score -1.32
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.546147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21841480 92 + 23771897
UACGUGUAUCGCUCAU---UUAUGAUUGAUAUACUCGCAUAGCAAAGUUAUAUUUACAAAUCCCACAACAUAAUCGCAA-GUGAGCCGCAAAAGA---C
...(((....((((((---((.((((((........((...))...((.......)).............)))))).))-)))))))))......---. ( -15.00)
>DroSec_CAF1 22404 95 + 1
UACGUGUAUCGCUCAU---UUAUGAUUGAUAUACUCGCAUAGCAAAGUUAUAUUUACAAAUCCCACAACAUAAUCGCAA-GUGAGCCCGCAAAGACAAC
...(((....((((((---((.((((((........((...))...((.......)).............)))))).))-)))))).)))......... ( -15.30)
>DroSim_CAF1 21092 95 + 1
UACGUGUAUCGCUCAU---UUAUGAUUGAUAUACUCGCAUAGCAAAGUUAUAUUUACAAAUCCCACAACAUAAUCGCAA-GUGAGCCCGCAAAGACAAC
...(((....((((((---((.((((((........((...))...((.......)).............)))))).))-)))))).)))......... ( -15.30)
>DroEre_CAF1 21113 94 + 1
UACGUGUAUCGGUCAU---UUAUGAUUGAUAUACUCGCAUAGCAAAGUUAUAUUUACAAAACCCACAACUUAAUCGGAAGGUGAGCCUGCAAAA--GAC
...((((((((((((.---...))))))))))))..(((..((.(((((.................))))).(((....)))..)).)))....--... ( -21.13)
>DroYak_CAF1 17968 94 + 1
UACGUGUAUUGGUCAU---UUAUGAUUGAUAUACUCUCAUAGCAAAGUUAUAUUUACAAAAUCCACAACAUAAUCAGAAGGUGACCCCGCAAAA--GAC
...((((((..((((.---...))))..)))))).......((...(((((.(((.....................))).)))))...))....--... ( -14.90)
>DroPer_CAF1 57388 85 + 1
UAUAUAUAUUGAUCAUCGUAUAUGAACAGUAUA-UAGCAU---AAAGUUAUACAUAUAUUUACAACAAC---AAAGCAA-------CAGCAGCAACAAC
..(((((((((.((((.....)))).)))))))-))((..---...(((.((........)).)))...---...((..-------..)).))...... ( -12.70)
>consensus
UACGUGUAUCGCUCAU___UUAUGAUUGAUAUACUCGCAUAGCAAAGUUAUAUUUACAAAUCCCACAACAUAAUCGCAA_GUGAGCCCGCAAAAA_AAC
...((((((((.((((.....)))).))))))))................................................................. (-10.01 =  -9.40 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:13:00 2006