Locus 8337

Sequence ID 3L_DroMel_CAF1
Location 21,840,370 – 21,840,470
Length 100
Max. P 0.942521
window13646

overview

Window 6

Location 21,840,370 – 21,840,470
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 91.14
Mean single sequence MFE -29.79
Consensus MFE -25.58
Energy contribution -26.90
Covariance contribution 1.32
Combinations/Pair 1.16
Mean z-score -1.71
Structure conservation index 0.86
SVM decision value 1.33
SVM RNA-class probability 0.942521
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21840370 100 + 23771897
GUAUGGAGAUGUGUGGUGCAGGGAGUGAGGAGUGAAGCCAAGGGAAAUGACAGGAAGCUUUUGGUAGUCAUCGCGUUGGUCGCUGCGCAAAUAUUUCUUG
....((((((((...((((((.((.(((.(.((((.((((((((.............))))))))..))))..).))).)).))))))..)))))))).. ( -33.82)
>DroSec_CAF1 21298 100 + 1
GUAUGGGGAUGUGUGGUGCAGGGAGUGAGGAGUGGAGCCAAGGGAAAUGACAGGAAGCUUUUGGUAGUCAUCGCGUUGGUCGCUGCGCAAAUAUUUCUUG
....((..((((...((((((.((.(((.(.((((.((((((((.............))))))))..))))..).))).)).))))))..))))..)).. ( -32.12)
>DroSim_CAF1 19987 100 + 1
GUAUGGGGAUGUGUGGUGCAGGGAGUGAGGAGUGGAGCCAAGGGAAAUGACAGGAAGCUUUUGGUAGUCAUCGCGUUGGUCGCUGCGCAAAUAUUUCUUG
....((..((((...((((((.((.(((.(.((((.((((((((.............))))))))..))))..).))).)).))))))..))))..)).. ( -32.12)
>DroEre_CAF1 20064 93 + 1
-------GGUGUGUGGUGCAGGGAGUGGGGCGUGUAGCCGAGGGAAAUGACAGGAAGCUUUUGGUAGUCAUCGCGUUGGUCGCUGCGCAAAAAUUUCUUG
-------........((((((.((.(((.(((((..((((((((.............))))))))...)).))).))).)).))))))............ ( -29.12)
>DroYak_CAF1 16912 91 + 1
--------AUGUGUGGUGCAGGG-GUGGGGAGUGAAGCCGCGGGAAAUGACAGGAAGCUUUUGGUAGUCAUCGCGUUGGUCGCUGCGCAAAUAUUUCUUG
--------.(.((((((......-............)))))).)......(((((((..(((((((((.(((.....))).))))).))))..))))))) ( -21.77)
>consensus
GUAUGG_GAUGUGUGGUGCAGGGAGUGAGGAGUGAAGCCAAGGGAAAUGACAGGAAGCUUUUGGUAGUCAUCGCGUUGGUCGCUGCGCAAAUAUUUCUUG
....((((((((...((((((.((.(((.(.((((.((((((((.............))))))))..))))..).))).)).))))))..)))))))).. (-25.58 = -26.90 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:12:57 2006